Search claims · PlantClaims

Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

The RM162-RM5753 interval allele had negative effects on plant height and whole growth period.

Taxon: japonica RiceOryza sativa Japonica Groupt0
Gene: RM162-RM5753e6
Outcome: PH and WGPe6
Direction: decreaseinferrede6

Verbatim

t0
“QTL Mapping for Yield and Yield Related Traits in japonica Rice”
✓ located verbatim in the source · title, characters 30–93

e6
“The alleles at the interval RM7097-RM448 on the long arm of chromosome 3 and the interval RM162-RM5753 on the long arm of chromosome 6 detected by the conditional method which could increase GY had negative effects on PH and WGP”
✓ located verbatim in the source · abstract, characters 1220–1448

Title

Unconditional and Conditional QTL Mapping for Yield and Yield Related Traits in japonica Rice in Multi-environments

Delin Hong Zhongguo shuidao kexue 2012

Other claims from this paper (14)

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

kin7l mutant yield per plant decreased by 8.81 g.

Taxon: riceOryza sativat0
Treatment: kin7le0
Gene: kin7le0
Outcome: YPPe0
Direction: reductione0
Value: 8.81 ge0

Not reportedComparator

Verbatim

t0
“Rice”
✓ located verbatim in the source · title, characters 155–159

e0
“Notably, some mutants showed interesting phenotypes, e.g., kin7l (kinesin motor gene) and kin14m (kinesin motor gene), bzr3 (BES1/BZR1 homolog) and nrfg4 (neo-tetraploid rice fertility related gene) exhibited 44.65%, 24.30%, 24.42% and 28.33% decrease in SS and 8.81 g, 4.71 g, 5.90 g, 6.22 g reduction in YPP, respectively.”
✓ located verbatim in the source · abstract, characters 1345–1669

Title

Production Assessment and Genome Comparison Revealed High Yield Potential and Novel Specific Alleles Associated with Fertility and Yield in Neo-Tetraploid Rice

Hang Yu; Muhammad Qasim Shahid; Qihang Li; et al. Rice 2020. doi:10.1186/s12284-020-00387-3

Other claims from this paper (17)

Association Yield per plant increased by 4.45 g and was significantly associated with seed setting improvement.
Association Seed setting increased by 29.44% and was significantly associated with yield improvement.
Observation NTR yield significantly improved relative to parental lines.
Observation NTR seed setting significantly improved relative to parental lines.
Method / resource Inherited chromosomal blocks illustrated NTR genome composition.
Observation The 13 NTR lines conserved 222 non-parental genes relative to low-fertility parental lines.
Observation The non-parental genes overlapped yield and fertility QTLs.
Observation RNA-Seq found 81 of these genes enriched in reproductive tissues.
Intervention effect Knockout mutants had an average 25.63% decrease in seed setting.
Intervention effect Knockout mutants had an average 4.88 g decrease in yield per plant.
Intervention effect kin7l mutant seed setting decreased by 44.65%.
Intervention effect kin14m mutant seed setting decreased by 24.30%.
Intervention effect kin14m mutant yield per plant decreased by 4.71 g.
Intervention effect bzr3 mutant seed setting decreased by 24.42%.
Intervention effect bzr3 mutant yield per plant decreased by 5.90 g.
Intervention effect nrfg4 mutant seed setting decreased by 28.33%.
Intervention effect nrfg4 mutant yield per plant decreased by 6.22 g.

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

kin14m mutant yield per plant decreased by 4.71 g.

Taxon: riceOryza sativat0
Treatment: kin14me0
Gene: kin14me0
Outcome: YPPe0
Direction: reductione0
Value: 4.71 ge0

Not reportedComparator

Verbatim

t0
“Rice”
✓ located verbatim in the source · title, characters 155–159

e0
“Notably, some mutants showed interesting phenotypes, e.g., kin7l (kinesin motor gene) and kin14m (kinesin motor gene), bzr3 (BES1/BZR1 homolog) and nrfg4 (neo-tetraploid rice fertility related gene) exhibited 44.65%, 24.30%, 24.42% and 28.33% decrease in SS and 8.81 g, 4.71 g, 5.90 g, 6.22 g reduction in YPP, respectively.”
✓ located verbatim in the source · abstract, characters 1345–1669

Title

Production Assessment and Genome Comparison Revealed High Yield Potential and Novel Specific Alleles Associated with Fertility and Yield in Neo-Tetraploid Rice

Hang Yu; Muhammad Qasim Shahid; Qihang Li; et al. Rice 2020. doi:10.1186/s12284-020-00387-3

Other claims from this paper (17)

Association Yield per plant increased by 4.45 g and was significantly associated with seed setting improvement.
Association Seed setting increased by 29.44% and was significantly associated with yield improvement.
Observation NTR yield significantly improved relative to parental lines.
Observation NTR seed setting significantly improved relative to parental lines.
Method / resource Inherited chromosomal blocks illustrated NTR genome composition.
Observation The 13 NTR lines conserved 222 non-parental genes relative to low-fertility parental lines.
Observation The non-parental genes overlapped yield and fertility QTLs.
Observation RNA-Seq found 81 of these genes enriched in reproductive tissues.
Intervention effect Knockout mutants had an average 25.63% decrease in seed setting.
Intervention effect Knockout mutants had an average 4.88 g decrease in yield per plant.
Intervention effect kin7l mutant seed setting decreased by 44.65%.
Intervention effect kin7l mutant yield per plant decreased by 8.81 g.
Intervention effect kin14m mutant seed setting decreased by 24.30%.
Intervention effect bzr3 mutant seed setting decreased by 24.42%.
Intervention effect bzr3 mutant yield per plant decreased by 5.90 g.
Intervention effect nrfg4 mutant seed setting decreased by 28.33%.
Intervention effect nrfg4 mutant yield per plant decreased by 6.22 g.

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

bzr3 mutant yield per plant decreased by 5.90 g.

Taxon: riceOryza sativat0
Treatment: bzr3e0
Gene: bzr3e0
Outcome: YPPe0
Direction: reductione0
Value: 5.90 ge0

Not reportedComparator

Verbatim

t0
“Rice”
✓ located verbatim in the source · title, characters 155–159

e0
“Notably, some mutants showed interesting phenotypes, e.g., kin7l (kinesin motor gene) and kin14m (kinesin motor gene), bzr3 (BES1/BZR1 homolog) and nrfg4 (neo-tetraploid rice fertility related gene) exhibited 44.65%, 24.30%, 24.42% and 28.33% decrease in SS and 8.81 g, 4.71 g, 5.90 g, 6.22 g reduction in YPP, respectively.”
✓ located verbatim in the source · abstract, characters 1345–1669

Title

Production Assessment and Genome Comparison Revealed High Yield Potential and Novel Specific Alleles Associated with Fertility and Yield in Neo-Tetraploid Rice

Hang Yu; Muhammad Qasim Shahid; Qihang Li; et al. Rice 2020. doi:10.1186/s12284-020-00387-3

Other claims from this paper (17)

Association Yield per plant increased by 4.45 g and was significantly associated with seed setting improvement.
Association Seed setting increased by 29.44% and was significantly associated with yield improvement.
Observation NTR yield significantly improved relative to parental lines.
Observation NTR seed setting significantly improved relative to parental lines.
Method / resource Inherited chromosomal blocks illustrated NTR genome composition.
Observation The 13 NTR lines conserved 222 non-parental genes relative to low-fertility parental lines.
Observation The non-parental genes overlapped yield and fertility QTLs.
Observation RNA-Seq found 81 of these genes enriched in reproductive tissues.
Intervention effect Knockout mutants had an average 25.63% decrease in seed setting.
Intervention effect Knockout mutants had an average 4.88 g decrease in yield per plant.
Intervention effect kin7l mutant seed setting decreased by 44.65%.
Intervention effect kin7l mutant yield per plant decreased by 8.81 g.
Intervention effect kin14m mutant seed setting decreased by 24.30%.
Intervention effect kin14m mutant yield per plant decreased by 4.71 g.
Intervention effect bzr3 mutant seed setting decreased by 24.42%.
Intervention effect nrfg4 mutant seed setting decreased by 28.33%.
Intervention effect nrfg4 mutant yield per plant decreased by 6.22 g.

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

nrfg4 mutant yield per plant decreased by 6.22 g.

Taxon: riceOryza sativat0
Treatment: nrfg4e0
Gene: nrfg4e0
Outcome: YPPe0
Direction: reductione0
Value: 6.22 ge0

Not reportedComparator

Verbatim

t0
“Rice”
✓ located verbatim in the source · title, characters 155–159

e0
“Notably, some mutants showed interesting phenotypes, e.g., kin7l (kinesin motor gene) and kin14m (kinesin motor gene), bzr3 (BES1/BZR1 homolog) and nrfg4 (neo-tetraploid rice fertility related gene) exhibited 44.65%, 24.30%, 24.42% and 28.33% decrease in SS and 8.81 g, 4.71 g, 5.90 g, 6.22 g reduction in YPP, respectively.”
✓ located verbatim in the source · abstract, characters 1345–1669

Title

Production Assessment and Genome Comparison Revealed High Yield Potential and Novel Specific Alleles Associated with Fertility and Yield in Neo-Tetraploid Rice

Hang Yu; Muhammad Qasim Shahid; Qihang Li; et al. Rice 2020. doi:10.1186/s12284-020-00387-3

Other claims from this paper (17)

Association Yield per plant increased by 4.45 g and was significantly associated with seed setting improvement.
Association Seed setting increased by 29.44% and was significantly associated with yield improvement.
Observation NTR yield significantly improved relative to parental lines.
Observation NTR seed setting significantly improved relative to parental lines.
Method / resource Inherited chromosomal blocks illustrated NTR genome composition.
Observation The 13 NTR lines conserved 222 non-parental genes relative to low-fertility parental lines.
Observation The non-parental genes overlapped yield and fertility QTLs.
Observation RNA-Seq found 81 of these genes enriched in reproductive tissues.
Intervention effect Knockout mutants had an average 25.63% decrease in seed setting.
Intervention effect Knockout mutants had an average 4.88 g decrease in yield per plant.
Intervention effect kin7l mutant seed setting decreased by 44.65%.
Intervention effect kin7l mutant yield per plant decreased by 8.81 g.
Intervention effect kin14m mutant seed setting decreased by 24.30%.
Intervention effect kin14m mutant yield per plant decreased by 4.71 g.
Intervention effect bzr3 mutant seed setting decreased by 24.42%.
Intervention effect bzr3 mutant yield per plant decreased by 5.90 g.
Intervention effect nrfg4 mutant seed setting decreased by 28.33%.

Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Two Brachypodium laccases were implicated in lignification.

Taxon: BrachypodiumBrachypodiume0
Gene: laccasese0
Outcome: lignificatione0
Qualifier: involved in lignificatione0

Verbatim

e0
“two Brachypodium laccases with clearly identified orthologs in crops are involved in lignification of this model plant”
✓ located verbatim in the source · abstract, characters 1000–1118

Title

Inactivation of LACCASE8 and LACCASE5 genes in Brachypodium distachyon leads to severe decrease in lignin content and high increase in saccharification yield without impacting plant integrity

Philippe Le Bris; Yin Wang; Clément Barbereau; et al. Biotechnology for Biofuels 2019. doi:10.1186/s13068-019-1525-5

Other claims from this paper (8)

Intervention effect Double laccase inactivation reduced mature culm lignin content by 20–30% versus wild type.
Intervention effect Double laccase inactivation increased saccharification yield by 140% versus wild type.
Intervention effect Ferulic acid release after mild alkaline hydrolysis was 2.5-fold higher in the double mutant.
Observation Interfascicular fibers were primarily affected by the double mutation.
Observation Vascular bundle integrity was not impaired by the double mutation.
Observation The double mutation had no drastic impact on plant growth.
Observation Interfascicular fiber and metaxylem cell lignification were partly uncoupled.
Recommendation Orthologs of these laccases were proposed as targets to improve grass biofuel feedstock.

Mechanismobservedoriginal resultnegativemeasured

Claim · model-written summary

FAMA knockdown inhibited expression of myrosinase genes in Arabidopsis thaliana.

Taxon: Arabidopsis thalianaArabidopsis thalianae0
Treatment: knockdown of FAMA genee0
Gene: FAMAe0
Outcome: expression of myrosinase genese0
Qualifier: inhibitinge0

Verbatim

e0
“the knockdown of FAMA gene in Arabidopsis thaliana could significantly decrease sulforaphane yield by inhibiting the expression of myrosinase genes”
✓ located verbatim in the source · abstract, characters 1329–1476

Title

BoMyrosinase plays an essential role in sulforaphane accumulation in response to selenite treatment in broccoli

Qiuyun Wu; Qi Wu; Yuxiao Tian; et al. Horticultural Plant Journal 2023. doi:10.1016/j.hpj.2023.04.005

Other claims from this paper (13)

Association Selenite-associated change in broccoli sprout sulforaphane content was positively related to BoMY expression.
Intervention effect BoMY overexpression increased myrosinase activity in Arabidopsis thaliana tgg1 mutant rosette leaves.
Intervention effect BoMY overexpression increased sulforaphane content in Arabidopsis thaliana tgg1 mutant rosette leaves.
Intervention effect BoMY overexpression rescued the Arabidopsis thaliana tgg1 mutant phenotypes.
Intervention effect BoMY-overexpressed broccoli lines had increased myrosinase activity.
Intervention effect BoMY-overexpressed broccoli lines had increased sulforaphane content.
Observation A 2 033 bp BoMY promoter fragment was isolated.
Mechanism BoFAMA directly bound the BoMY promoter.
Mechanism BoFAMA activated BoMY expression.
Observation BoFAMA responded to selenite and was highly expressed in broccoli leaves.
Observation BoFAMA protein localized solely to the nucleus.
Intervention effect FAMA knockdown significantly decreased sulforaphane yield in Arabidopsis thaliana.
Intervention effect Exogenous selenite partly restored low sulforaphane content in FAMA-silenced Arabidopsis plants.

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Inbreeding from S 2 to S 3 caused inbreeding depression in seed weight, fertility and seed yield in three families.

Taxon: BROMUS INERMISBromus inermist0
Treatment: inbreedinge3
Outcome: seed weight, fertility and seed yielde3
Direction: decreaseinferrede4
Value: 19, 24 and 66 per cente4
Comparator: S 2e4

Verbatim

t0
“BROMEGRASS, BROMUS INERMIS LEYSS.”
✓ located verbatim in the source · title, characters 52–85

e3
“These three traits all exhibited substantial inbreeding depression, averaging 21, 20 and 53 per cent for seed weight, fertility and seed yield, respectively, from S 0 to S 1 for seven families”
✓ located verbatim in the source · abstract, characters 794–986

e4
“19, 24 and 66 per cent, respectively from S 2 to S 3 for three families”
✓ located verbatim in the source · abstract, characters 992–1063

Title

INHERITANCE OF SEED WEIGHT AND ASSOCIATED TRAITS IN BROMEGRASS, BROMUS INERMIS LEYSS.

B. R. Christie; R. R. Kalton Canadian Journal of Plant Science 1960. doi:10.4141/cjps60-047

Other claims from this paper (9)

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

The GPAT1 mutation increased plant height through increased cell length.

Taxon: ArabidopsisArabidopsist0
Treatment: loss of function mutation in GPAT1e0
Gene: GPAT1e0
Outcome: plant heighte0
Direction: increasee0
Qualifier: enhanced cell lengthe0

Not reportedComparator

Verbatim

t0
“Arabidopsis”
✓ located verbatim in the source · title, characters 20–31

e0
“A loss of function mutation in GPAT1 was shown to decrease seed yield but increase plant height through enhanced cell length.”
✓ located verbatim in the source · abstract, characters 453–578

Title

A GPAT1 Mutation in Arabidopsis Enhances Plant Height but Impairs Seed Oil Biosynthesis

Yang Bai; Yue Shen; Zhiqiang Zhang; et al. International Journal of Molecular Sciences 2021. doi:10.3390/ijms22020785

Other claims from this paper (5)

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

ub2 and ub3 double mutants had increased ear row number.

Taxon: MaizeZea mayst0
Material: Double mutantse0
Outcome: ear row numbere0
Direction: increasee0

Verbatim

t0
“Maize”
✓ located verbatim in the source · title, characters 0–5

e0
“Double mutants display a decrease in tassel branch number and an increase in ear row number”
✓ located verbatim in the source · abstract, characters 404–495

Title

Maize SBP-box transcription factors unbranched2 and unbranched3 affect yield traits by regulating the rate of lateral primordia initiation

George S. Chuck; Patrick J. Brown; Robert Meeley; et al. Proceedings of the National Academy of Sciences 2014. doi:10.1073/pnas.1407401112

Other claims from this paper (9)

“yield decrease”

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