Abstract
Bambusa tulda Roxb., a member of the Bambusoideae subfamily, is an ecologically and commercially important plant resource widely distributed in the Indian subcontinent. Our study reports long-read PacBio HiFi sequencing and genome assembly of B. tulda. The de novo haploid genome assembly of B. tulda predicted 43 contigs, distributed across three subgenomes, with a total sequenced length of 1.37 Gb, contig N50 of 35.69 Mb, and BUSCO score 99%. Repetitive elements constitute 63.31% of the genome. Functional annotation predicted 56,890 protein-coding genes, constituting 19.44% of the genome. This genome sequence will serve as an invaluable resource for future studies on the life history traits, phylogenomic analysis, comparative genomics, and targeted genome modification for important trait improvement of B. tulda.
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Claims 7
Claim · model-written summary
The B. tulda de novo haploid genome assembly has a total sequenced length of 1.37 Gb.
- Taxon
- B. tulda
Bambusa tuldae1 - Outcome
- total sequenced lengthe1
- Value
- 1.37 Gbe1
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“The de novo haploid genome assembly of B. tulda predicted 43 contigs, distributed across three subgenomes, with a total sequenced length of 1.37 Gb”
Claim · model-written summary
The B. tulda genome assembly predicted 43 contigs distributed across three subgenomes.
- Taxon
- B. tuldaBambusa tuldae1
- Outcome
- contigse1
- Value
- 43e1
- Qualifier
- distributed across three subgenomese1
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“The de novo haploid genome assembly of B. tulda predicted 43 contigs, distributed across three subgenomes, with a total sequenced length of 1.37 Gb”
Claim · model-written summary
The B. tulda genome assembly has a contig N50 of 35.69 Mb.
- Taxon
- B. tuldaBambusa tuldae1
- Outcome
- contig N50e2
- Value
- 35.69 Mbe2
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“The de novo haploid genome assembly of B. tulda predicted 43 contigs, distributed across three subgenomes, with a total sequenced length of 1.37 Gb”
e2“contig N50 of 35.69 Mb, and BUSCO score 99%”
Claim · model-written summary
The B. tulda genome assembly has a BUSCO score of 99%.
- Taxon
- B. tuldaBambusa tuldae1
- Outcome
- BUSCO scoree2
- Value
- 99%e2
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“The de novo haploid genome assembly of B. tulda predicted 43 contigs, distributed across three subgenomes, with a total sequenced length of 1.37 Gb”
e2“contig N50 of 35.69 Mb, and BUSCO score 99%”
Claim · model-written summary
Repetitive elements constitute 63.31% of the B. tulda genome.
- Taxon
- B. tuldaBambusa tuldae1
- Outcome
- Repetitive elementse3
- Value
- 63.31%e3
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“The de novo haploid genome assembly of B. tulda predicted 43 contigs, distributed across three subgenomes, with a total sequenced length of 1.37 Gb”
e3“Repetitive elements constitute 63.31% of the genome”
Claim · model-written summary
The B. tulda genome annotation predicted 56,890 protein-coding genes.
- Taxon
- B. tuldaBambusa tuldae1
- Outcome
- protein-coding genese4
- Value
- 56,890e4
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“The de novo haploid genome assembly of B. tulda predicted 43 contigs, distributed across three subgenomes, with a total sequenced length of 1.37 Gb”
e4“Functional annotation predicted 56,890 protein-coding genes, constituting 19.44% of the genome”
Claim · model-written summary
Protein-coding genes constitute 19.44% of the B. tulda genome.
- Taxon
- B. tuldaBambusa tuldae1
- Outcome
- protein-coding genese4
- Value
- 19.44%e4
- Qualifier
- constituting 19.44% of the genomee4
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“The de novo haploid genome assembly of B. tulda predicted 43 contigs, distributed across three subgenomes, with a total sequenced length of 1.37 Gb”
e4“Functional annotation predicted 56,890 protein-coding genes, constituting 19.44% of the genome”