Paper · 2025 · CINECA IRIS Institutional Research Information System (Fondazione Edmund Mach)

Aerobiome and environmental DNA: a novel tool for monitoring biodiversity in an Alpine region

Cristofori, A.; Girardi, M.; Micheletti, D.; et al.

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Open access · other-oa

Abstract

Airborne biodiversity reflects the presence of plant and fungal species across the ecosystem and records the seasonal variation in the phenological phase of flowering and sporulation. The ALPoll project explores the potential of airborne environmental DNA (eDNA) to monitor plant and fungal biodiversity in alpine areas, particularly rich in endemic species and sensitive to climate change. In a preliminary study conducted at a rural site, airborne samples were collected using a Sigma-2 gravimetric sampler. DNA was extracted and amplified using ITS1 and ITS2 barcodes. Sequencing was performed via Illumina, and a tailored bioinformatics pipeline was developed for high-resolution taxonomic assignment. A curated reference database was created by querying international sequence datasets with the list of species of the local flora and results were compared with the UNITE database of eukaryotic taxa. Aerobiological sample analysis by light microscopy was also applied to complement and interpret molecular data. Results highlight seasonal dynamics in airborne pollen/plant biodiversity and confirm the effectiveness of eDNA for detecting diverse plant taxa. With UNITE and ITS1, samples included 19 genus of Viridiplantae and 250 genus of Fungi. ITS2 resulted in a deeper plant identification, with up to 45 families and 82 genera. Molecular and microscopic plant/pollen data resulted in a strong agreement, supporting the use of airborne eDNA as a scalable, non-invasive method for biodiversity monitoring. This approach provides new insights into the aerobiome and supports the development of integrated monitoring tools, contributing to NBFC’s mission of innovating biodiversity assessment and monitoring strategies across Italy.

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Claims 7

Observationobservedoriginal resultmeasured

Claim · model-written summary

Airborne eDNA showed seasonal dynamics in airborne pollen and plant biodiversity.

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seasonal dynamics in airborne pollen/plant biodiversitye0

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“seasonal dynamics in airborne pollen/plant biodiversity”

✓ located verbatim in the source · abstract, characters 1035–1090 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Airborne eDNA was effective for detecting diverse plant taxa.

Taxon
plant taxae0
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effectiveness of eDNA for detectinge0

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“the effectiveness of eDNA for detecting diverse plant taxa”

✓ located verbatim in the source · abstract, characters 1103–1161 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

With UNITE and ITS1, samples included 19 genera of Viridiplantae.

Taxon
ViridiplantaeViridiplantaee0
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genuse0
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19 genuse0

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e0

“With UNITE and ITS1, samples included 19 genus of Viridiplantae and 250 genus of Fungi”

✓ located verbatim in the source · abstract, characters 1163–1249 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

With UNITE and ITS1, samples included 250 genera of Fungi.

Taxon
FungiFungie0
Outcome
genuse0
Value
250 genuse0

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e0

“With UNITE and ITS1, samples included 19 genus of Viridiplantae and 250 genus of Fungi”

✓ located verbatim in the source · abstract, characters 1163–1249 · show in text ↑
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

ITS2 gave deeper plant identification, reaching up to 45 families.

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plante0
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deeper plant identificatione0
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45 familiese0

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e0

“ITS2 resulted in a deeper plant identification, with up to 45 families and 82 genera”

✓ located verbatim in the source · abstract, characters 1251–1335 · show in text ↑
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

ITS2 gave deeper plant identification, reaching up to 82 genera.

Taxon
plante0
Outcome
deeper plant identificatione0
Value
82 generae0

Verbatim

e0

“ITS2 resulted in a deeper plant identification, with up to 45 families and 82 genera”

✓ located verbatim in the source · abstract, characters 1251–1335 · show in text ↑
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

Molecular and microscopic plant and pollen data agreed strongly.

Taxon
plante0
Outcome
strong agreemente0
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microscopic plant/pollen datae0

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e0

“Molecular and microscopic plant/pollen data resulted in a strong agreement”

✓ located verbatim in the source · abstract, characters 1337–1411 · show in text ↑