Paper · 2025 · Biologia et Biotechnologia

Silicon Mobilization in Soils by Bacillus subtilis VKM B-1574

O.B. Vaishlya; E.B. Kudryashova; E.V. Ariskina; et al.

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Open access · cc-by-nc

Abstract

Silicon leaching plays an important role in the rock weathering, ores leaching, and soil-plant interactions. Mobile silicon compounds are vital for the growth of various plants. Meanwhile, the diversity of bacterial species and strains capable of actively silicon leaching from solid mineral material is strictly limited. The strain Bacillus sp. VKM В-1574 capable of solubilizing minerals in soils has been identified. This strain showed the highest similarity to the 16S rRNA gene sequence and the gyrB gene of Bacillus subtilis strain. Recently, this strain was shown to be able to leach silicon and other essential chemical elements from phosphorite ore, vermiculite, chernozem, and urban soils. The analysis of phosphorite bioleaching revealed a significant dissolution of silicon and Scanning electron microscopy confirmed the bacterial leaching of phosphorite rocks. Bioleaching of vermiculite was the highest in dissolved compounds compared to non-inoculated samples in case of numerous chemical elements including the rare ones. Application of B. subtilis VKM В-1574 to two soil samples on which wheat and cucumber were grown increased the amount of silicon compounds both in soil extracts and plants compared to non-inoculated variants. Some possible mechanisms of the silicon mobilization and the role of silicon in plants are discussed. Выщелачивание кремния играет важную роль в выветривании горных пород, переработке руд и почвенно-растительных взаимодействиях. Подвижные соединения кремния жизненно необходимы для роста различных растений. При этом разнообразие видов и штаммов бактерий, способных активно выщелачивать кремний из твердых минеральных материалов, крайне ограничено. Идентифицирован штамм Bacillus sp. VKM В-1574, способный растворять минералы в почвах. Анализ последовательностей генов 16S рРНК и gyrB данного штамма выявил наивысшее сходство со штаммом Bacillus subtilis. Показано, что этот штамм способен выщелачивать кремний и другие необходимые химические элементы из фосфоритовой руды, вермикулита, чернозема и городских почв. Анализ биовыщелачивания фосфорита выявил значительное растворение кремния, а сканирующая электронная микроскопия подтвердила бактериальное выщелачивание фосфоритовых пород. Биовыщелачивание вермикулита показало наивысшее содержание растворенных соединений по сравнению с неинокулированными образцами для целого ряда химических элементов, включая редкие. Применение B. subtilis VKM В-1574 к двум образцам почв, на которых выращивались пшеница и огурец, увеличило количество соединений кремния как в почвенных экстрактах, так и в растениях по сравнению с неинокулированными вариантами. В статье обсуждаются возможные механизмы мобилизации кремния, а также роль кремния в росте растений.

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Claims 3

Observationobservedoriginal resultmeasured

Claim · model-written summary

Bacillus strain showed closest sequence similarity to B. subtilis.

Interactor
Bacillus subtilisBacillus subtilise0symbiont
Outcome
highest similarity to the 16S rRNA gene sequence and the gyrB gene of Bacillus subtilis straine0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗
Bacillus subtilis
Bacillus subtilis · InteractorY tambe (original uploader) · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“This strain showed the highest similarity to the 16S rRNA gene sequence and the gyrB gene of Bacillus subtilis strain”

✓ located verbatim in the source · abstract, characters 420–537 · show in text ↑
e1

“wheat and cucumber were grown”

✓ located verbatim in the source · abstract, characters 1105–1134 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Bacterial treatment increased silicon compounds in wheat plants.

Treatment
Application of B. subtilis VKM В-1574e0
Interactor
B. subtilis VKM В-1574Bacillus subtilise0symbiont
Outcome
amount of silicon compounds both in soil extracts and plantse0
Direction
increasede0
Comparator
non-inoculated variantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗
Bacillus subtilis
Bacillus subtilis · InteractorY tambe (original uploader) · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Application of B. subtilis VKM В-1574 to two soil samples on which wheat and cucumber were grown increased the amount of silicon compounds both in soil extracts and plants compared to non-inoculated variants”

✓ located verbatim in the source · abstract, characters 1038–1245 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Bacterial treatment increased silicon compounds in cucumber plants.

Taxon
cucumberCucumis sativuse0
Treatment
Application of B. subtilis VKM В-1574e0
Interactor
B. subtilis VKM В-1574Bacillus subtilise0symbiont
Outcome
amount of silicon compounds both in soil extracts and plantse0
Direction
increasede0
Comparator
non-inoculated variantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucumis sativus
Cucumis sativus · TaxonH. Zell · CC BY-SA 3.0 · Wikimedia Commons ↗
Bacillus subtilis
Bacillus subtilis · InteractorY tambe (original uploader) · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Application of B. subtilis VKM В-1574 to two soil samples on which wheat and cucumber were grown increased the amount of silicon compounds both in soil extracts and plants compared to non-inoculated variants”

✓ located verbatim in the source · abstract, characters 1038–1245 · show in text ↑

Bacillus subtilis · molecular: metabolites · Triticum aestivum (wheat)Positive and negative results

8 papers: 7 positive, 1 negative or no effect

6 papers in the same direction as this paper · 1 in the opposite direction

  1. no effect
  2. positive
  3. positive

4 papers more in this group

See all 8 papers →

Bacillus subtilis · molecular: metabolites · Cucumis sativus (cucumber)Results agree

3 papers: 3 positive, 0 negative or no effect

2 papers in the same direction as this paper

  1. positive
  2. positive
See all 3 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.