Paper · 2025 · Horticultural Plant Journal

Transcriptome analysis of grape root to determine the regulatory network response to melatonin

Lili Xu; Wenmao Yang; Hongyang Guo; et al.

6
claims
30
verbatim quotes
2
citations
4
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Open access · cc-by-nc-nd

Abstract

A root system, which serves as the cornerstone of a plant, is the organ system that initially perceives alterations in soil nutrient concentrations and water conditions. Plant hormones constitute highly significant determinants of root growth and development. To explore the response patterns of ‘Sapphire’, ‘Black Emperor’ and ‘Autumn Crisp’ grape ( Vitis vinifera L.) roots to melatonin (MT), grape roots were treated with different concentrations of melatonin respectively. The results revealed that the effects of different MT concentrations were similar to those of different auxin concentrations within the range of 0.1, 0.3, and 0.5 mg · L -1 for IBA and IAA, which promoted root growth at low concentrations but inhibited root growth at high concentrations. Furthermore, compared with the control, 10 μmol · L -1 MT significantly promoted root growth and development by interacting with various endogenous hormones and signaling molecules and with phenols and anthocyanins in grape roots. RNA – seq analysis revealed that a total of 1 419 differentially expressed genes (DEGs) identified after MT treatment were enriched in 20 biological processes associated with secondary metabolism, including the biosynthesis of phenylpropanoids, nitrogen metabolism, plant hormone signal transduction, and galactose metabolism. In particular, 11 genes were significantly enriched in the resveratrol metabolic pathway, with 10 being upregulated from 2.93 – to 9.19 – fold compared with those in the control. Overall, these results suggested that MT promoted the growth and development of grape roots by regulating the levels of hormones and signaling molecules. Our findings revealed a novel role for MT in root growth and development, suggesting that several transcription-related metabolic pathways could be involved in hormone signaling. This study provided valuable information on root growth and development for the breeding of grape varieties.

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Claims 6

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Low melatonin concentrations promoted grape root growth.

Taxon
grapee0t0e1e2e3
Treatment
MT concentrationse0t0e1e2e3
Outcome
root growthe0t0e1e2e3
Direction
promotede0t0e1e2e3
Qualifier
low concentrationse0t0e1e2e3

Not reportedComparator

Verbatim

e0

“promoted root growth at low concentrations but inhibited root growth at high concentrations”

✓ located verbatim in the source · abstract, characters 673–764 · show in text ↑
t0

“grape root”

✓ located verbatim in the source · title, characters 26–36 · show in text ↑
e1

“after MT treatment”

✓ located verbatim in the source · abstract, characters 1096–1114 · show in text ↑
e2

“different MT concentrations”

✓ located verbatim in the source · abstract, characters 518–545 · show in text ↑
e3

“11 genes were significantly enriched in the resveratrol metabolic pathway”

✓ located verbatim in the source · abstract, characters 1339–1412 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

High melatonin concentrations inhibited grape root growth.

Taxon
grapee0t0e1e2e3
Treatment
MT concentrationse0t0e1e2e3
Outcome
root growthe0t0e1e2e3
Direction
inhibitede0t0e1e2e3
Qualifier
high concentrationse0t0e1e2e3

Not reportedComparator

Verbatim

e0

“promoted root growth at low concentrations but inhibited root growth at high concentrations”

✓ located verbatim in the source · abstract, characters 673–764 · show in text ↑
t0

“grape root”

✓ located verbatim in the source · title, characters 26–36 · show in text ↑
e1

“after MT treatment”

✓ located verbatim in the source · abstract, characters 1096–1114 · show in text ↑
e2

“different MT concentrations”

✓ located verbatim in the source · abstract, characters 518–545 · show in text ↑
e3

“11 genes were significantly enriched in the resveratrol metabolic pathway”

✓ located verbatim in the source · abstract, characters 1339–1412 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Melatonin at 10 μmol · L -1 significantly promoted grape root growth and development versus control.

Taxon
grapee0t0e1e2e3
Treatment
10 μmol · L -1 MTe0t0e1e2e3
Outcome
root growth and developmente0t0e1e2e3
Direction
promotede0t0e1e2e3
Comparator
the controle0t0e1e2e3

Verbatim

e0

“compared with the control, 10 μmol · L -1 MT significantly promoted root growth and development”

✓ located verbatim in the source · abstract, characters 779–874 · show in text ↑
t0

“grape root”

✓ located verbatim in the source · title, characters 26–36 · show in text ↑
e1

“after MT treatment”

✓ located verbatim in the source · abstract, characters 1096–1114 · show in text ↑
e2

“different MT concentrations”

✓ located verbatim in the source · abstract, characters 518–545 · show in text ↑
e3

“11 genes were significantly enriched in the resveratrol metabolic pathway”

✓ located verbatim in the source · abstract, characters 1339–1412 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Melatonin treatment yielded 1 419 differentially expressed genes enriched in 20 secondary-metabolism processes.

Taxon
grapee0t0e1e2e3
Treatment
MT treatmente0t0e1e2e3
Outcome
differentially expressed genese0t0e1e2e3
Direction
enrichede0t0e1e2e3
Value
1 419 differentially expressed genese0t0e1e2e3

Not reportedComparator

Verbatim

e0

“a total of 1 419 differentially expressed genes (DEGs) identified after MT treatment were enriched in 20 biological processes associated with secondary metabolism”

✓ located verbatim in the source · abstract, characters 1030–1192 · show in text ↑
t0

“grape root”

✓ located verbatim in the source · title, characters 26–36 · show in text ↑
e1

“after MT treatment”

✓ located verbatim in the source · abstract, characters 1096–1114 · show in text ↑
e2

“different MT concentrations”

✓ located verbatim in the source · abstract, characters 518–545 · show in text ↑
e3

“11 genes were significantly enriched in the resveratrol metabolic pathway”

✓ located verbatim in the source · abstract, characters 1339–1412 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Eleven genes were enriched in the resveratrol pathway following melatonin treatment.

Taxon
grapee0t0e1e2e3
Treatment
MT treatmente0t0e1e2e3
Outcome
resveratrol metabolic pathwaye0t0e1e2e3
Direction
enrichede0t0e1e2e3
Value
11 genese0t0e1e2e3

Not reportedComparator

Verbatim

e0

“11 genes were significantly enriched in the resveratrol metabolic pathway”

✓ located verbatim in the source · abstract, characters 1339–1412 · show in text ↑
t0

“grape root”

✓ located verbatim in the source · title, characters 26–36 · show in text ↑
e1

“after MT treatment”

✓ located verbatim in the source · abstract, characters 1096–1114 · show in text ↑
e2

“different MT concentrations”

✓ located verbatim in the source · abstract, characters 518–545 · show in text ↑
e3

“11 genes were significantly enriched in the resveratrol metabolic pathway”

✓ located verbatim in the source · abstract, characters 1339–1412 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Ten resveratrol-pathway genes were upregulated 2.93–9.19 fold versus control.

Taxon
grapee0t0e1e2e3
Treatment
MT treatmente0t0e1e2e3
Outcome
genese0t0e1e2e3
Direction
upregulatede0t0e1e2e3
Value
2.93 – to 9.19 – folde0t0e1e2e3
Comparator
the controle0t0e1e2e3

Verbatim

e0

“10 being upregulated from 2.93 – to 9.19 – fold compared with those in the control”

✓ located verbatim in the source · abstract, characters 1419–1501 · show in text ↑
t0

“grape root”

✓ located verbatim in the source · title, characters 26–36 · show in text ↑
e1

“after MT treatment”

✓ located verbatim in the source · abstract, characters 1096–1114 · show in text ↑
e2

“different MT concentrations”

✓ located verbatim in the source · abstract, characters 518–545 · show in text ↑
e3

“11 genes were significantly enriched in the resveratrol metabolic pathway”

✓ located verbatim in the source · abstract, characters 1339–1412 · show in text ↑

melatonin · growth · VitisResults agree

4 papers: 4 positive, 0 negative or no effect

3 papers in the same direction as this paper

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  2. positive
  3. positive
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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.