Paper · 2025 · Microbiome

Underground guardians: how collagen and chitin amendments shape soil microbiome structure and function for Meloidogyne enterolobii control

Josephine M. Pasche; Roshni Sawlani; Victor Hugo Buttrós; et al.

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claims
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verbatim quotes
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citations
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Open access · cc-by

Abstract

Abstract Background The emergence of the guava root-knot nematode ( Meloidogyne enterolobii ) poses a significant threat to tomato yields globally. This study evaluated the impact of collagen and chitin soil amendments on soil microbial composition and function (fungal and bacterial communities) and their effects on tomato plant health and M. enterolobii infection under standard (5000 eggs plant −1 ) and high (50,000 eggs plant −1 ) inoculum pressure. Conducted in a greenhouse setting, the study investigated the effectiveness of these amendments in nurturing beneficial microbial communities across both native and agricultural soils. Results Both collagen and chitin were effective in reducing nematode egg counts by up to 66% and 84% under standard and high inoculum pressure, respectively, and enhanced plant health parameters (biomass and chlorophyll content). Moreover, a microbiome shift led to an increase in bacterial ( Kitasatospora , Bacillus , and Streptomyces ) and fungal ( Phialemonium ) genera, known for their chitinase, collagenase, and plant-parasitic nematode control. Among the microbes, Streptomyces spp. were found among the core microbiome and associated with a lower disease incidence assessed through a phenotype-OTU network analysis (PhONA). Under standard inoculum, higher metabolite expression was observed with amino acids representing a majority among the metabolite groups. Conclusions The findings highlight the potential of collagen and chitin to mitigate M. enterolobii infection by fostering beneficial soil microbial communities.

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Claims 6

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Collagen and chitin soil amendments reduced Meloidogyne enterolobii egg counts on tomato by up to 66% under standard and 84% under high inoculum pressure.

Treatment
collagen and chitine1
Interactor
Meloidogyne enterolobiiMeloidogyne enterolobiit0pathogen
Outcome
nematode egg countse1
Direction
reducinge1
Value
66% and 84%e1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗
Meloidogyne enterolobii
Meloidogyne enterolobii · Interactor · picture from its Wikimedia Commons categoryJeffrey W. Lotz, Florida Department of Agriculture and Consumer Services, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Meloidogyne enterolobii”

✓ located verbatim in the source · title, characters 107–130 · show in text ↑
e0

“tomato plant health”

✓ located verbatim in the source · abstract, characters 318–337 · show in text ↑
e1

“Both collagen and chitin were effective in reducing nematode egg counts by up to 66% and 84% under standard and high inoculum pressure, respectively”

✓ located verbatim in the source · abstract, characters 649–797 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Collagen and chitin amendments enhanced tomato plant health parameters, namely biomass and chlorophyll content.

Treatment
collagen and chitine1
Outcome
biomass and chlorophyll contente1
Direction
enhancede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“tomato plant health”

✓ located verbatim in the source · abstract, characters 318–337 · show in text ↑
e1

“Both collagen and chitin were effective in reducing nematode egg counts by up to 66% and 84% under standard and high inoculum pressure, respectively, and enhanced plant health parameters (biomass and chlorophyll content)”

✓ located verbatim in the source · abstract, characters 649–869 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

A soil microbiome shift increased the bacterial genera Kitasatospora, Bacillus and Streptomyces and the fungal genus Phialemonium.

Outcome
bacterial ( Kitasatospora , Bacillus , and Streptomyces ) and fungal ( Phialemonium ) generae0
Direction
increasee0

Not reportedTaxon

Verbatim

e0

“a microbiome shift led to an increase in bacterial ( Kitasatospora , Bacillus , and Streptomyces ) and fungal ( Phialemonium ) genera”

✓ located verbatim in the source · abstract, characters 881–1014 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Streptomyces spp. were found among the core microbiome.

Taxon
Streptomyces spp.Streptomycese0
Outcome
core microbiomee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Streptomyces
Streptomyces · Taxon · picture of the genus (one of its species)Public domain · Wikimedia Commons ↗

Verbatim

e0

“Streptomyces spp. were found among the core microbiome”

✓ located verbatim in the source · abstract, characters 1114–1168 · show in text ↑
Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

Streptomyces spp. abundance was associated with lower disease incidence in a phenotype-OTU network analysis.

Taxon
Streptomyces spp.Streptomycese0
Interactor
Streptomyces spp.Streptomycese0other
Outcome
disease incidencee1
Direction
lowere1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Streptomyces
Streptomyces · Taxon · picture of the genus (one of its species)Public domain · Wikimedia Commons ↗

Verbatim

e0

“Streptomyces spp.”

✓ located verbatim in the source · abstract, characters 1114–1131 · show in text ↑
e1

“associated with a lower disease incidence”

✓ located verbatim in the source · abstract, characters 1173–1214 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Under standard inoculum, metabolite expression was higher, with amino acids forming the majority of metabolite groups.

Outcome
metabolite expressione0
Direction
highere0
Qualifier
Under standard inoculume0

Not reportedTaxon

Verbatim

e0

“Under standard inoculum, higher metabolite expression was observed with amino acids representing a majority among the metabolite groups”

✓ located verbatim in the source · abstract, characters 1274–1409 · show in text ↑

resistance inducer · Meloidogyne enterolobii · Solanum lycopersicum (tomato)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

resistance inducer · physiology: pigments · Solanum lycopersicum (tomato)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.