Abstract
The interactions between plants and microbes are essential for enhancing crop productivity. However, the mechanisms underlying host-specific microbiome migration and functional assembly remain poorly understood. In this study, microbiome migration from soil to leaves in rice (Oryza sativa) and maize (Zea mays) was analyzed through 16S rRNA sequencing and phenotypic assessments. When we used the same soil microbiome source to grow rice and maize, microbiota and functional traits were specifically enriched by maize in its phyllosphere and rhizosphere. This indicated that plants can selectively assemble microbiomes from a shared microbiota source. Therefore, 22 strains were isolated from the phyllospheres of rice and maize and used to construct a synthetic microbial community (SynCom). When the soil for rice and maize growth was inoculated with the SynCom, strains belonging to Bacillus were enriched in the maize phyllosphere compared to the rice phyllosphere. Additionally, a strain belonging to Rhizobium was enriched in the maize rhizosphere compared to the rice rhizosphere. These results suggest that plant species influence the migration of microbiota within their respective compartments. Compared with mock inoculation, SynCom inoculation significantly enhanced plant growth. When we compared the microbiomes, strains belonging to Achromobacter, which were assembled by both rice and maize, played a role in enhancing plant growth. Our findings underscore the importance of microbial migration dynamics and functional assembly in leveraging plant–microbe interactions for sustainable agriculture.
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Claims 5
Claim · model-written summary
Maize specifically enriched microbiota and functional traits in its phyllosphere and rhizosphere from shared soil.
- Organ / stage
- phyllosphere and rhizospheree0
- Interactor
- microbiotae0symbiont
- Outcome
- microbiota and functional traitse0
- Direction
- enrichede0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“When we used the same soil microbiome source to grow rice and maize, microbiota and functional traits were specifically enriched by maize in its phyllosphere and rhizosphere.”
Claim · model-written summary
Bacillus strains were enriched in the maize phyllosphere relative to rice after SynCom soil inoculation.
- Organ / stage
- phyllospheree0
- Treatment
- inoculated with the SynCome0
- Interactor
- Bacilluse0symbiont
- Outcome
- strains belonging to Bacilluse0
- Direction
- enrichede0
- Comparator
- rice phyllospheree0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“When the soil for rice and maize growth was inoculated with the SynCom, strains belonging to Bacillus were enriched in the maize phyllosphere compared to the rice phyllosphere.”
Claim · model-written summary
Rhizobium was enriched in maize rhizosphere relative to rice rhizosphere.
- Organ / stage
- rhizospheree0
- Outcome
- strain belonging to Rhizobiume0
- Direction
- enrichede0
- Comparator
- rice rhizospheree0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“Additionally, a strain belonging to Rhizobium was enriched in the maize rhizosphere compared to the rice rhizosphere.”
Claim · model-written summary
SynCom inoculation significantly enhanced plant growth versus mock inoculation.
- Treatment
- SynCom inoculatione0
- Interactor
- SynCome0symbiont
- Outcome
- plant growthe0
- Direction
- enhancede0
- Comparator
- mock inoculatione0
Not reportedTaxon
Verbatim
e0“Compared with mock inoculation, SynCom inoculation significantly enhanced plant growth.”
Claim · model-written summary
Achromobacter strains assembled by both rice and maize contributed to growth enhancement.
- Taxon
- rice and maize
Oryza sativa
Zea mayse0 - Interactor
- Achromobacter
Achromobactere0symbiont
- Outcome
- plant growthe0
- Direction
- enhancinge0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“strains belonging to Achromobacter, which were assembled by both rice and maize, played a role in enhancing plant growth.”
The same questions in other papers
inoculation · growth · Zea mays (maize)Positive and negative results
634 papers in the same direction as this paper · 61 in the opposite direction · 3 reporting no difference from an alternative
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- positive
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