Paper · 2024 · Biology

Genetic Adaptations of Soybean to Cold Stress Reveal Key Insights Through Transcriptomic Analysis

Xiulin Liu; Chunlei Zhang; Sobhi F. Lamlom; et al.

6
claims
12
verbatim quotes
14
citations
3
research areas
✓
Open access · cc-by

Abstract

Low temperatures greatly restrict the development, growth, and productivity of soybeans, with their effects differing across various cultivars. The present work investigated the transcriptome and physiological reactions of two soybean cultivars, namely "KD52" exhibiting cold tolerance and "DS17" displaying cold sensitivity, to cold stress across a precisely defined period. The soybean plants were subjected to cold treatment at 6 °C for durations of 0, 2, 4, and 8 h. A comparative physiological marker study revealed distinct reactions to cold stress in the two cultivars. The findings showed that increased malondialdehyde levels provided evidence of DS17's heightened vulnerability to lipid peroxidation and membrane degradation. In contrast, the KD52 cultivar exhibited increased activities of antioxidant enzymes, including peroxidase and superoxide dismutase, in response to cold exposure, suggesting a strong antioxidant defense system against oxidative stress. The transcriptomic analysis revealed dynamic responses, mapping 54,532 genes. Within this group, a total of 234 differentially expressed genes (DEGs) were found to be consistently changed at several time intervals, showing unique expression patterns across the two cultivars. Analysis of the association between these important DEGs and the physiological indicators revealed candidate genes that may be involved in controlling oxidative damage and antioxidant defenses. Some key genes showed a progressive rise in expression over time in both cultivars, with a more significant acceleration in KD52, and are probably involved in promoting adaptation processes during extended periods of cold exposure. The identification of improved defense mechanisms in KD52, together with the identification of crucial genes, offers great prospects for enhancing the cold stress resilience of soybean.

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Claims 6

Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

Cold-sensitive DS17 showed increased malondialdehyde and lipid peroxidation vulnerability.

Taxon
SoybeanGlycine maxt0
Material
DS17e0
Outcome
malondialdehyde levelse0
Direction
increasede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“increased malondialdehyde levels provided evidence of DS17's heightened vulnerability to lipid peroxidation and membrane degradation”

✓ located verbatim in the source · abstract, characters 602–734 · show in text ↑
t0

“Soybean”

✓ located verbatim in the source · title, characters 23–30 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

KD52 increased peroxidase and superoxide dismutase activities after cold exposure.

Taxon
SoybeanGlycine maxt0
Material
KD52e0
Treatment
cold exposuree0
Gene
peroxidase and superoxide dismutasee0
Outcome
activities of antioxidant enzymes, including peroxidase and superoxide dismutasee0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“the KD52 cultivar exhibited increased activities of antioxidant enzymes, including peroxidase and superoxide dismutase, in response to cold exposure”

✓ located verbatim in the source · abstract, characters 749–897 · show in text ↑
t0

“Soybean”

✓ located verbatim in the source · title, characters 23–30 · show in text ↑
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Transcriptomic analysis mapped 54,532 soybean genes.

Taxon
SoybeanGlycine maxt0
Outcome
genese0
Value
54,532 genese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“The transcriptomic analysis revealed dynamic responses, mapping 54,532 genes”

✓ located verbatim in the source · abstract, characters 972–1048 · show in text ↑
t0

“Soybean”

✓ located verbatim in the source · title, characters 23–30 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Two cultivars had 234 consistently changed DEGs across intervals with distinct expression patterns.

Taxon
SoybeanGlycine maxt0
Outcome
differentially expressed genes (DEGs)e0
Value
234 differentially expressed genese0
Qualifier
at several time intervalse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“234 differentially expressed genes (DEGs) were found to be consistently changed at several time intervals, showing unique expression patterns across the two cultivars”

✓ located verbatim in the source · abstract, characters 1080–1246 · show in text ↑
t0

“Soybean”

✓ located verbatim in the source · title, characters 23–30 · show in text ↑
Associationauthor interpretationoriginal resultmeasured

Claim · model-written summary

DEG–physiology associations identified candidate genes for oxidative damage and antioxidant defense.

Taxon
SoybeanGlycine maxt0
Gene
DEGse0
Outcome
candidate genese0
Qualifier
may be involved in controlling oxidative damage and antioxidant defensese0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Analysis of the association between these important DEGs and the physiological indicators revealed candidate genes that may be involved in controlling oxidative damage and antioxidant defenses”

✓ located verbatim in the source · abstract, characters 1248–1440 · show in text ↑
t0

“Soybean”

✓ located verbatim in the source · title, characters 23–30 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Some key genes rose progressively in both cultivars, with greater acceleration in KD52.

Taxon
SoybeanGlycine maxt0
Material
KD52e0
Outcome
expressione0
Direction
progressive risee0
Qualifier
in both cultivarse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Some key genes showed a progressive rise in expression over time in both cultivars, with a more significant acceleration in KD52”

✓ located verbatim in the source · abstract, characters 1442–1570 · show in text ↑
t0

“Soybean”

✓ located verbatim in the source · title, characters 23–30 · show in text ↑

cold · physiology: antioxidant enzymes · Glycine max (soybean)Positive and negative results

3 papers: 1 positive, 2 negative or no effect

2 in the opposite direction

  1. negative
  2. negative
See all 3 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.