Paper · 2023 · Plants

Genome-Wide Identification and Expression Analysis of the Trehalose-6-phosphate Synthase and Trehalose-6-phosphate Phosphatase Gene Families in Rose (Rosa hybrida cv ‘Carola’) under Different Light Conditions

Yingdong Fan; Peng Gao; Tong Zhou; et al.

13
claims
25
verbatim quotes
19
citations
4
research areas
✓
Open access · cc-by

Abstract

Trehalose, trehalose-6-phosphate synthase (TPS),and trehalose-6-phosphatase (TPP) have been reported to play important roles in plant abiotic stress and growth development. However, their functions in the flowering process of Rosa hybrida have not been characterized. In this study we found that, under a short photoperiod or weak light intensity, the content of trehalose in the shoot apical meristem of Rosa hybrida cv ‘Carola’ significantly decreased, leading to delayed flowering time. A total of nine RhTPSs and seven RhTPPs genes were identified in the genome. Cis-element analysis suggested that RhTPS and RhTPP genes were involved in plant hormones and environmental stress responses. Transcriptome data analysis reveals significant differences in the expression levels of RhTPSs and RhTPPs family genes in different tissues and indicates that RhTPPF and RhTPPJ are potential key genes involved in rose flower bud development under different light environments. The results of quantitative real-time reverse transcription (qRT-PCR) further indicate that under short photoperiod and weak light intensity all RhTPP members were significantly down-regulated. Additionally, RhTPS1a, RhTPS10, and RhTPS11 were up-regulated under a short photoperiod and showed a negative correlation with flowering time and trehalose content decrease. Under weak light intensity, RhTPS11 was up-regulated and negatively regulated flowering, while RhTPS5, RhTPS6, RhTPS7b, RhTPS9, and RhTPS10 were down-regulated and positively regulated flowering. This work lays the foundation for revealing the functions of RhTPS and RhTPP gene families in the regulation of rose trehalose.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

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Claims 13

Intervention effectobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

Short photoperiod or weak light reduced shoot meristem trehalose and delayed flowering.

Taxon
Rosa hybridaRosa hybrid cultivare0
Material
cv ‘Carola’e0
Organ / stage
shoot apical meristeme0
Treatment
short photoperiod or weak light intensitye0
Outcome
content of trehalosee0
Direction
decreasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Rosa hybrid cultivar
Rosa hybrid cultivar · Taxon · picture of its genus (no picture of exactly this name)Primazega · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“under a short photoperiod or weak light intensity, the content of trehalose in the shoot apical meristem of Rosa hybrida cv ‘Carola’ significantly decreased, leading to delayed flowering time.”

✓ located verbatim in the source · abstract, characters 297–489 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Nine RhTPS genes were identified.

Taxon
Rosa hybridaRosa hybrid cultivart0
Gene
RhTPSse0
Outcome
RhTPSse0
Value
ninee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Rosa hybrid cultivar
Rosa hybrid cultivar · Taxon · picture of its genus (no picture of exactly this name)Primazega · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“A total of nine RhTPSs and seven RhTPPs genes were identified in the genome.”

✓ located verbatim in the source · abstract, characters 490–566 · show in text ↑
t0

“Rosa hybrida”

✓ located verbatim in the source · title, characters 150–162 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Seven RhTPP genes were identified.

Taxon
Rosa hybridaRosa hybrid cultivart0
Gene
RhTPPse0
Outcome
RhTPPs genese0
Value
sevene0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Rosa hybrid cultivar
Rosa hybrid cultivar · Taxon · picture of its genus (no picture of exactly this name)Primazega · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“A total of nine RhTPSs and seven RhTPPs genes were identified in the genome.”

✓ located verbatim in the source · abstract, characters 490–566 · show in text ↑
t0

“Rosa hybrida”

✓ located verbatim in the source · title, characters 150–162 · show in text ↑
Associationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Cis-element analysis suggested RhTPS and RhTPP roles in hormone and stress response.

Taxon
Rosa hybridaRosa hybrid cultivart0
Gene
RhTPS and RhTPP genese0
Outcome
plant hormones and environmental stress responsese0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Rosa hybrid cultivar
Rosa hybrid cultivar · Taxon · picture of its genus (no picture of exactly this name)Primazega · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Cis-element analysis suggested that RhTPS and RhTPP genes were involved in plant hormones and environmental stress responses.”

✓ located verbatim in the source · abstract, characters 567–692 · show in text ↑
t0

“Rosa hybrida”

✓ located verbatim in the source · title, characters 150–162 · show in text ↑
Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

RhTPS and RhTPP expression differed significantly across tissues.

Taxon
Rosa hybridaRosa hybrid cultivart0
Organ / stage
different tissuese0
Gene
RhTPSs and RhTPPs family genese0
Outcome
expression levelse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Rosa hybrid cultivar
Rosa hybrid cultivar · Taxon · picture of its genus (no picture of exactly this name)Primazega · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“significant differences in the expression levels of RhTPSs and RhTPPs family genes in different tissues”

✓ located verbatim in the source · abstract, characters 729–832 · show in text ↑
t0

“Rosa hybrida”

✓ located verbatim in the source · title, characters 150–162 · show in text ↑
Associationauthor interpretationoriginal resultmeasured

Claim · model-written summary

RhTPPF and RhTPPJ were proposed as key genes in bud development under different light.

Taxon
Rosa hybridaRosa hybrid cultivart0
Gene
RhTPPF and RhTPPJe0
Outcome
rose flower bud developmente0
Qualifier
potentiale0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Rosa hybrid cultivar
Rosa hybrid cultivar · Taxon · picture of its genus (no picture of exactly this name)Primazega · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“RhTPPF and RhTPPJ are potential key genes involved in rose flower bud development under different light environments.”

✓ located verbatim in the source · abstract, characters 852–969 · show in text ↑
t0

“Rosa hybrida”

✓ located verbatim in the source · title, characters 150–162 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

All RhTPP members were downregulated under short photoperiod and weak light.

Taxon
Rosa hybridaRosa hybrid cultivart0
Treatment
short photoperiod and weak light intensitye0
Gene
RhTPPe0
Outcome
RhTPP memberse0
Direction
down-regulatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Rosa hybrid cultivar
Rosa hybrid cultivar · Taxon · picture of its genus (no picture of exactly this name)Primazega · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“under short photoperiod and weak light intensity all RhTPP members were significantly down-regulated.”

✓ located verbatim in the source · abstract, characters 1062–1163 · show in text ↑
t0

“Rosa hybrida”

✓ located verbatim in the source · title, characters 150–162 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

RhTPS1a was upregulated under short photoperiod and negatively correlated with flowering and trehalose decrease.

Taxon
Rosa hybridaRosa hybrid cultivart0
Treatment
short photoperiode0
Gene
RhTPS1ae0
Outcome
flowering time and trehalose content decreasee0
Direction
negative correlatione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Rosa hybrid cultivar
Rosa hybrid cultivar · Taxon · picture of its genus (no picture of exactly this name)Primazega · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“RhTPS1a, RhTPS10, and RhTPS11 were up-regulated under a short photoperiod and showed a negative correlation with flowering time and trehalose content decrease.”

✓ located verbatim in the source · abstract, characters 1178–1337 · show in text ↑
t0

“Rosa hybrida”

✓ located verbatim in the source · title, characters 150–162 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

RhTPS10 was upregulated under short photoperiod and negatively correlated with flowering and trehalose decrease.

Taxon
Rosa hybridaRosa hybrid cultivart0
Treatment
short photoperiode0
Gene
RhTPS10e0
Outcome
flowering time and trehalose content decreasee0
Direction
negative correlatione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Rosa hybrid cultivar
Rosa hybrid cultivar · Taxon · picture of its genus (no picture of exactly this name)Primazega · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“RhTPS1a, RhTPS10, and RhTPS11 were up-regulated under a short photoperiod and showed a negative correlation with flowering time and trehalose content decrease.”

✓ located verbatim in the source · abstract, characters 1178–1337 · show in text ↑
t0

“Rosa hybrida”

✓ located verbatim in the source · title, characters 150–162 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

RhTPS11 was upregulated under short photoperiod and negatively correlated with flowering and trehalose decrease.

Taxon
Rosa hybridaRosa hybrid cultivart0
Treatment
short photoperiode0
Gene
RhTPS11e0
Outcome
flowering time and trehalose content decreasee0
Direction
negative correlatione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Rosa hybrid cultivar
Rosa hybrid cultivar · Taxon · picture of its genus (no picture of exactly this name)Primazega · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“RhTPS1a, RhTPS10, and RhTPS11 were up-regulated under a short photoperiod and showed a negative correlation with flowering time and trehalose content decrease.”

✓ located verbatim in the source · abstract, characters 1178–1337 · show in text ↑
t0

“Rosa hybrida”

✓ located verbatim in the source · title, characters 150–162 · show in text ↑
Associationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Weak light upregulated RhTPS11, which authors said negatively regulated flowering.

Taxon
Rosa hybridaRosa hybrid cultivart0
Treatment
weak light intensitye0
Gene
RhTPS11e0
Outcome
floweringe0
Direction
negativelye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Rosa hybrid cultivar
Rosa hybrid cultivar · Taxon · picture of its genus (no picture of exactly this name)Primazega · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Under weak light intensity, RhTPS11 was up-regulated and negatively regulated flowering”

✓ located verbatim in the source · abstract, characters 1338–1425 · show in text ↑
t0

“Rosa hybrida”

✓ located verbatim in the source · title, characters 150–162 · show in text ↑
Associationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Weak light downregulated RhTPS5, RhTPS6 and RhTPS7b, linked positively to flowering.

Taxon
Rosa hybridaRosa hybrid cultivart0
Treatment
weak light intensitye0
Gene
RhTPS5, RhTPS6, RhTPS7be0
Outcome
floweringe0
Direction
positivelye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Rosa hybrid cultivar
Rosa hybrid cultivar · Taxon · picture of its genus (no picture of exactly this name)Primazega · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Under weak light intensity, RhTPS11 was up-regulated and negatively regulated flowering, while RhTPS5, RhTPS6, RhTPS7b, RhTPS9, and RhTPS10 were down-regulated and positively regulated flowering.”

✓ located verbatim in the source · abstract, characters 1338–1533 · show in text ↑
t0

“Rosa hybrida”

✓ located verbatim in the source · title, characters 150–162 · show in text ↑
Associationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Weak light downregulated RhTPS9 and RhTPS10, linked positively to flowering.

Taxon
Rosa hybridaRosa hybrid cultivart0
Gene
RhTPS9, and RhTPS10e0
Outcome
floweringe0
Direction
positivelye0

Not reportedTreatment

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Rosa hybrid cultivar
Rosa hybrid cultivar · Taxon · picture of its genus (no picture of exactly this name)Primazega · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“RhTPS5, RhTPS6, RhTPS7b, RhTPS9, and RhTPS10 were down-regulated and positively regulated flowering.”

✓ located verbatim in the source · abstract, characters 1433–1533 · show in text ↑
t0

“Rosa hybrida”

✓ located verbatim in the source · title, characters 150–162 · show in text ↑

light · molecular: metabolites · Rosa hybrid cultivarPositive and negative results

2 papers: 1 positive, 1 negative or no effect

1 in the opposite direction

  1. positive
See all 2 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.