Paper · 2023 · Frontiers in Plant Science

Metagenomics-based exploration of key soil microorganisms contributing to continuously planted Casuarina equisetifolia growth inhibition and their interactions with soil nutrient transformation

Yuhua Wang; Shaoxiong Lin; Jianjuan Li; et al.

14
claims
14
verbatim quotes
14
citations
4
research areas
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Open access · cc-by

Abstract

Casuarina equisetifolia ( C. equisetifolia ) is an economically important forest tree species, often cultivated in continuous monoculture as a coastal protection forest. Continuous planting has gradually affected growth and severely restricted the sustainable development of the C. equisetifolia industry. In this study, we analyzed the effects of continuous planting on C. equisetifolia growth and explored the rhizosphere soil microecological mechanism from a metagenomic perspective. The results showed that continuous planting resulted in dwarfing, shorter root length, and reduced C. equisetifolia seedling root system. Metagenomics analysis showed that 10 key characteristic microorganisms, mainly Actinoallomurus , Actinomadura , and Mycobacterium , were responsible for continuously planted C. equisetifolia trees. Quantitative analysis showed that the number of microorganisms in these three genera decreased significantly with the increase of continuous planting. Gene function analysis showed that continuous planting led to the weakening of the environmental information processing-signal transduction ability of soil characteristic microorganisms, and the decrease of C. equisetifolia trees against stress. Reduced capacity for metabolism, genetic information processing-replication and repair resulted in reduced microbial propagation and reduced microbial quantity in the rhizosphere soil of C. equisetifolia trees. Secondly, amino acid metabolism, carbohydrate metabolism, glycan biosynthesis and metabolism, lipid metabolism, metabolism of cofactors and vitamins were all significantly reduced, resulting in a decrease in the ability of the soil to synthesize and metabolize carbon and nitrogen. These reduced capacities further led to reduced soil microbial quantity, microbial carbon and nitrogen, microbial respiration intensity, reduced soil enzyme nutrient cycling and resistance-related enzyme activities, a significant reduction in available nutrient content of rhizosphere soils, a reduction in the ion exchange capacity, and an impediment to C. equisetifolia growth. This study provides an important basis for the management of continuously planted C. equisetifolia plantations.

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Claims 14

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Continuous planting caused Casuarina dwarfing.

Taxon
C. equisetifoliaCasuarina equisetifoliae0
Treatment
continuous plantinge0
Outcome
dwarfinge0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Casuarina equisetifolia
Casuarina equisetifolia · TaxonEthel Aardvark · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“continuous planting resulted in dwarfing, shorter root length, and reduced C. equisetifolia seedling root system.”

✓ located verbatim in the source · abstract, characters 511–624 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Continuous planting shortened Casuarina roots.

Taxon
C. equisetifoliaCasuarina equisetifoliae0
Treatment
continuous plantinge0
Outcome
root lengthe0
Direction
shortere0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Casuarina equisetifolia
Casuarina equisetifolia · TaxonEthel Aardvark · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“continuous planting resulted in dwarfing, shorter root length, and reduced C. equisetifolia seedling root system.”

✓ located verbatim in the source · abstract, characters 511–624 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Continuous planting reduced the Casuarina seedling root system.

Taxon
C. equisetifoliaCasuarina equisetifoliae0
Treatment
continuous plantinge0
Outcome
seedling root systeme0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Casuarina equisetifolia
Casuarina equisetifolia · TaxonEthel Aardvark · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“continuous planting resulted in dwarfing, shorter root length, and reduced C. equisetifolia seedling root system.”

✓ located verbatim in the source · abstract, characters 511–624 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Ten characteristic microorganisms were associated with continuously planted Casuarina trees.

Taxon
C. equisetifoliaCasuarina equisetifoliae0
Interactor
ActinoallomurusActinoallomuruse0symbiont
Outcome
key characteristic microorganismse0
Value
10e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Casuarina equisetifolia
Casuarina equisetifolia · TaxonEthel Aardvark · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“10 key characteristic microorganisms, mainly Actinoallomurus , Actinomadura , and Mycobacterium , were responsible for continuously planted C. equisetifolia trees.”

✓ located verbatim in the source · abstract, characters 659–822 · show in text ↑
Associationobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

Actinoallomurus numbers decreased significantly with more continuous planting.

Treatment
continuous plantinge0
Outcome
number of microorganisms in these three generae0
Direction
decreasede0

Not reportedTaxon

Verbatim

e0

“the number of microorganisms in these three genera decreased significantly with the increase of continuous planting.”

✓ located verbatim in the source · abstract, characters 857–973 · show in text ↑
Mechanismobservedoriginal resultnegativemeasured

Claim · model-written summary

Continuous planting weakened microbial signal transduction and Casuarina stress defense.

Taxon
C. equisetifoliaCasuarina equisetifoliae0
Treatment
continuous plantinge0
Outcome
decrease of C. equisetifolia trees against stresse0
Qualifier
weakening of the environmental information processing-signal transduction ability of soil characteristic microorganismse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Casuarina equisetifolia
Casuarina equisetifolia · TaxonEthel Aardvark · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“continuous planting led to the weakening of the environmental information processing-signal transduction ability of soil characteristic microorganisms, and the decrease of C. equisetifolia trees against stress.”

✓ located verbatim in the source · abstract, characters 1009–1219 · show in text ↑
Mechanismobservedoriginal resultnegativemeasured

Claim · model-written summary

Reduced microbial metabolism and replication were linked to reduced microbial propagation and quantity.

Taxon
C. equisetifoliaCasuarina equisetifoliae0
Outcome
reduced microbial propagation and reduced microbial quantitye0
Qualifier
Reduced capacity for metabolism, genetic information processing-replication and repaire0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Casuarina equisetifolia
Casuarina equisetifolia · TaxonEthel Aardvark · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Reduced capacity for metabolism, genetic information processing-replication and repair resulted in reduced microbial propagation and reduced microbial quantity in the rhizosphere soil of C. equisetifolia trees.”

✓ located verbatim in the source · abstract, characters 1220–1430 · show in text ↑
Observationobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

Several microbial metabolic pathways were significantly reduced.

Outcome
amino acid metabolism, carbohydrate metabolism, glycan biosynthesis and metabolisme0
Direction
reducede0

Not reportedTaxon

Verbatim

e0

“amino acid metabolism, carbohydrate metabolism, glycan biosynthesis and metabolism, lipid metabolism, metabolism of cofactors and vitamins were all significantly reduced”

✓ located verbatim in the source · abstract, characters 1441–1610 · show in text ↑
Mechanismobservedoriginal resultnegativemeasured

Claim · model-written summary

Soil capacity to synthesize and metabolize carbon and nitrogen decreased.

Outcome
ability of the soil to synthesize and metabolize carbon and nitrogene0
Direction
decreasee0
Qualifier
resulting in a decreasee0

Not reportedTaxon

Verbatim

e0

“resulting in a decrease in the ability of the soil to synthesize and metabolize carbon and nitrogen.”

✓ located verbatim in the source · abstract, characters 1612–1712 · show in text ↑
Mechanismobservedoriginal resultnegativemeasured

Claim · model-written summary

Reduced microbial capacity lowered soil microbes, microbial carbon and nitrogen, and respiration.

Outcome
soil microbial quantity, microbial carbon and nitrogen, microbial respiration intensitye0
Direction
reducede0
Qualifier
These reduced capacitiese0

Not reportedTaxon

Verbatim

e0

“These reduced capacities further led to reduced soil microbial quantity, microbial carbon and nitrogen, microbial respiration intensity”

✓ located verbatim in the source · abstract, characters 1713–1848 · show in text ↑
Mechanismobservedoriginal resultnegativemeasured

Claim · model-written summary

Reduced microbial capacity lowered soil enzyme nutrient cycling and resistance activities.

Outcome
soil enzyme nutrient cycling and resistance-related enzyme activitiese0
Direction
reducede0
Qualifier
reduced soil enzyme nutrient cyclinge0

Not reportedTaxon

Verbatim

e0

“reduced soil enzyme nutrient cycling and resistance-related enzyme activities”

✓ located verbatim in the source · abstract, characters 1850–1927 · show in text ↑
Observationobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

Rhizosphere available nutrients were significantly reduced.

Outcome
available nutrient content of rhizosphere soilse0
Direction
reductione0

Not reportedTaxon

Verbatim

e0

“a significant reduction in available nutrient content of rhizosphere soils”

✓ located verbatim in the source · abstract, characters 1929–2003 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

Rhizosphere ion exchange capacity fell.

Outcome
ion exchange capacitye0
Direction
reductione0

Not reportedTaxon

Verbatim

e0

“a reduction in the ion exchange capacity”

✓ located verbatim in the source · abstract, characters 2005–2045 · show in text ↑
Mechanismobservedoriginal resultnegativemeasured

Claim · model-written summary

Soil changes impeded Casuarina growth.

Taxon
C. equisetifoliaCasuarina equisetifoliae0
Outcome
C. equisetifolia growthe0
Qualifier
impedimente0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Casuarina equisetifolia
Casuarina equisetifolia · TaxonEthel Aardvark · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“an impediment to C. equisetifolia growth.”

✓ located verbatim in the source · abstract, characters 2051–2092 · show in text ↑