Paper · 2023 · International Journal of Molecular Sciences

Transcriptome-Based WGCNA Analysis Reveals the Mechanism of Drought Resistance Differences in Sweetpotato (Ipomoea batatas (L.) Lam.)

Jikai Zong; Peitao Chen; Qingqing Luo; et al.

8
claims
18
verbatim quotes
23
citations
2
research areas
✓
Open access · cc-by

Abstract

Sweetpotato (Ipomoea batatas (L.) Lam.) is a globally significant storage root crop, but it is highly susceptible to yield reduction under severe drought conditions. Therefore, understanding the mechanism of sweetpotato resistance to drought stress is helpful for the creation of outstanding germplasm and the selection of varieties with strong drought resistance. In this study, we conducted a comprehensive analysis of the phenotypic and physiological traits of 17 sweetpotato breeding lines and 10 varieties under drought stress through a 48 h treatment in a Hoagland culture medium containing 20% PEG6000. The results showed that the relative water content (RWC) and vine-tip fresh-weight reduction (VTFWR) in XS161819 were 1.17 and 1.14 times higher than those for the recognized drought-resistant variety Chaoshu 1. We conducted RNA-seq analysis and weighted gene co-expression network analysis (WGCNA) on two genotypes, XS161819 and 18-12-3, which exhibited significant differences in drought resistance. The transcriptome analysis revealed that the hormone signaling pathway may play a crucial role in determining the drought resistance in sweetpotato. By applying WGCNA, we identified twenty-two differential expression modules, and the midnight blue module showed a strong positive correlation with drought resistance characteristics. Moreover, twenty candidate Hub genes were identified, including g47370 (AFP2), g14296 (CDKF), and g60091 (SPBC2A9), which are potentially involved in the regulation of drought resistance in sweetpotato. These findings provide important insights into the molecular mechanisms underlying drought resistance in sweetpotato and offer valuable genetic resources for the development of drought-resistant sweetpotato varieties in the future.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 8

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Under PEG drought, XS161819 had a relative water content 1.17 times higher than Chaoshu 1.

Taxon
SweetpotatoIpomoea batatast0
Material
XS161819e1
Treatment
48 h treatment in a Hoagland culture medium containing 20% PEG6000e2
Outcome
relative water content (RWC)e1
Direction
highere1
Value
1.17e1
Qualifier
times highere1
Comparator
Chaoshu 1e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ipomoea batatas
Ipomoea batatas · TaxonEarth100 · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Sweetpotato”

✓ located verbatim in the source · title, characters 94–105 · show in text ↑
e1

“The results showed that the relative water content (RWC) and vine-tip fresh-weight reduction (VTFWR) in XS161819 were 1.17 and 1.14 times higher than those for the recognized drought-resistant variety Chaoshu 1”

✓ located verbatim in the source · abstract, characters 610–820 · show in text ↑
e2

“48 h treatment in a Hoagland culture medium containing 20% PEG6000”

✓ located verbatim in the source · abstract, characters 542–608 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Under PEG drought, XS161819 had a vine-tip fresh-weight reduction 1.14 times higher than Chaoshu 1.

Taxon
SweetpotatoIpomoea batatast0
Material
XS161819e1
Treatment
48 h treatment in a Hoagland culture medium containing 20% PEG6000e2
Outcome
vine-tip fresh-weight reduction (VTFWR)e1
Direction
highere1
Value
1.14e1
Qualifier
times highere1
Comparator
Chaoshu 1e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ipomoea batatas
Ipomoea batatas · TaxonEarth100 · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Sweetpotato”

✓ located verbatim in the source · title, characters 94–105 · show in text ↑
e1

“The results showed that the relative water content (RWC) and vine-tip fresh-weight reduction (VTFWR) in XS161819 were 1.17 and 1.14 times higher than those for the recognized drought-resistant variety Chaoshu 1”

✓ located verbatim in the source · abstract, characters 610–820 · show in text ↑
e2

“48 h treatment in a Hoagland culture medium containing 20% PEG6000”

✓ located verbatim in the source · abstract, characters 542–608 · show in text ↑
Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Genotypes XS161819 and 18-12-3 differed significantly in drought resistance.

Taxon
SweetpotatoIpomoea batatast0
Material
XS161819 and 18-12-3e3
Outcome
drought resistancee3
Qualifier
significant differencese3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ipomoea batatas
Ipomoea batatas · TaxonEarth100 · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Sweetpotato”

✓ located verbatim in the source · title, characters 94–105 · show in text ↑
e3

“two genotypes, XS161819 and 18-12-3, which exhibited significant differences in drought resistance”

✓ located verbatim in the source · abstract, characters 912–1010 · show in text ↑
Mechanismhypothesisoriginal resultmeasured

Claim · model-written summary

The hormone signaling pathway may play a crucial role in determining drought resistance in sweetpotato.

Taxon
SweetpotatoIpomoea batatast0
Outcome
drought resistancee4
Qualifier
hormone signaling pathwaye4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ipomoea batatas
Ipomoea batatas · TaxonEarth100 · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Sweetpotato”

✓ located verbatim in the source · title, characters 94–105 · show in text ↑
e4

“the hormone signaling pathway may play a crucial role in determining the drought resistance in sweetpotato”

✓ located verbatim in the source · abstract, characters 1053–1159 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Twenty-two differential expression modules were identified by WGCNA.

Taxon
SweetpotatoIpomoea batatast0
Outcome
differential expression modulese5
Value
twenty-twoe5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ipomoea batatas
Ipomoea batatas · TaxonEarth100 · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Sweetpotato”

✓ located verbatim in the source · title, characters 94–105 · show in text ↑
e5

“By applying WGCNA, we identified twenty-two differential expression modules, and the midnight blue module showed a strong positive correlation with drought resistance characteristics”

✓ located verbatim in the source · abstract, characters 1161–1343 · show in text ↑
Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

The midnight blue module is positively correlated with drought resistance characteristics.

Taxon
SweetpotatoIpomoea batatast0
Gene
midnight blue modulee5
Outcome
drought resistance characteristicse5
Direction
positivee5
Qualifier
stronge5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ipomoea batatas
Ipomoea batatas · TaxonEarth100 · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Sweetpotato”

✓ located verbatim in the source · title, characters 94–105 · show in text ↑
e5

“By applying WGCNA, we identified twenty-two differential expression modules, and the midnight blue module showed a strong positive correlation with drought resistance characteristics”

✓ located verbatim in the source · abstract, characters 1161–1343 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Twenty candidate hub genes were identified.

Taxon
SweetpotatoIpomoea batatast0
Outcome
candidate Hub genese6
Value
twentye6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ipomoea batatas
Ipomoea batatas · TaxonEarth100 · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Sweetpotato”

✓ located verbatim in the source · title, characters 94–105 · show in text ↑
e6

“Moreover, twenty candidate Hub genes were identified, including g47370 (AFP2), g14296 (CDKF), and g60091 (SPBC2A9), which are potentially involved in the regulation of drought resistance in sweetpotato”

✓ located verbatim in the source · abstract, characters 1345–1546 · show in text ↑
Mechanismhypothesisoriginal resultmeasured

Claim · model-written summary

Hub genes g47370 (AFP2), g14296 (CDKF) and g60091 (SPBC2A9) are potentially involved in regulating drought resistance in sweetpotato.

Taxon
SweetpotatoIpomoea batatast0
Gene
g47370 (AFP2), g14296 (CDKF), and g60091 (SPBC2A9)e6
Outcome
drought resistancee6
Qualifier
potentially involved in the regulatione6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ipomoea batatas
Ipomoea batatas · TaxonEarth100 · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Sweetpotato”

✓ located verbatim in the source · title, characters 94–105 · show in text ↑
e6

“Moreover, twenty candidate Hub genes were identified, including g47370 (AFP2), g14296 (CDKF), and g60091 (SPBC2A9), which are potentially involved in the regulation of drought resistance in sweetpotato”

✓ located verbatim in the source · abstract, characters 1345–1546 · show in text ↑

drought · physiology: water · Ipomoea batatas (sweet potato)Positive and negative results

5 papers: 2 positive, 3 negative or no effect

1 paper in the same direction as this paper · 3 in the opposite direction

  1. negative
  2. negative
  3. negative

1 paper more in this group

See all 5 papers →

drought · growth · Ipomoea batatas (sweet potato)Positive and negative results

12 papers: 2 positive, 10 negative or no effect

1 paper in the same direction as this paper · 10 in the opposite direction

  1. negative
  2. negative
  3. negative

8 papers more in this group

See all 12 papers →

in vitro · growth · Ipomoea batatas (sweet potato)Positive and negative results

32 papers: 29 positive, 3 negative or no effect

28 papers in the same direction as this paper · 2 in the opposite direction · 1 reporting no difference from an alternative

  1. negative
  2. negative
  3. no effect

28 papers more in this group

See all 32 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.