Paper · 2023 · Ecotoxicology and Environmental Safety

Hormones and the antioxidant transduction pathway and gene expression, mediated by Serratia marcescens DB1, lessen the lethality of heavy metals (As, Ni, and Cr) in Oryza sativa L.

Dibya Bhatta; Arjun Adhikari; Sang-Mo Kang; et al.

17
claims
28
verbatim quotes
32
citations
4
research areas
✓
Open access · cc-by-nc-nd

Abstract

Microorganisms have recently gained recognition as efficient biological tool for reducing heavy metal toxicity in crops. In this experiment, we isolated a potent heavy metal (As, Ni, and Cr) resistant rhizobacterium Serratia marcescens DB1 and detected its plant growth promoting traits such as phosphate solubilization, gibberellin synthesis, organic acid production and amino acid regulation. Based on these findings, DB1 was further investigated for application in a rice var. Hwayeongbyeo subjected to 1 mM As, 4 mM Ni, and 4 mM Cr stress. The rice plants treated with Cr and Ni appeared healthy but were lethal, indicating unfitness for consumption due to toxic metal deposition, whereas the plants treated with > 1 mM As instantaneously died. Our results showed that DB1 inoculation significantly decreased metal accumulation in the rice shoots. Particularly, Cr uptake dropped by 16.55% and 22.12% in (Cr + DB1) and (Cr + As + Ni + DB1), respectively, As dropped by 48.90% and 35.82% in (As + DB1) and (Cr + As + Ni + DB1), respectively, and Ni dropped by 7.95% and 19.56% in (Ni + DB1) and (Cr + As + Ni + DB1), respectively. These findings were further validated by gene expression analysis results, which showed that DB1 inoculation significantly decreased the expression of OsPCS1 (a phytochelatin synthase gene), OsMTP1 (a metal transporting gene), and OsMTP5 (a gene for the expulsion of excess metal). Moreover, DB1 inoculation considerably enhanced the morphological growth of rice through modulation of endogenous phytohormones (abscisic acid, salicylic acid, and jasmonic acid) and uptake of essential elements such as K and P. These findings indicate that DB1 is an effective biofertilizer that can mitigate heavy metal toxicity in rice crops.

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Claims 17

Observationobservedoriginal resultmeasured

Claim · model-written summary

DB1 showed phosphate solubilization, gibberellin synthesis, organic acid production and amino acid regulation traits.

Taxon
Oryza sativa L.Oryza sativat0
Interactor
Serratia marcescens DB1Serratia marcescense0symbiont
Outcome
plant growth promoting traitse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Serratia marcescens
Serratia marcescens · InteractorPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Serratia marcescens DB1 and detected its plant growth promoting traits such as phosphate solubilization, gibberellin synthesis, organic acid production and amino acid regulation.”

✓ located verbatim in the source · abstract, characters 216–394 · show in text ↑
t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 165–180 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

Rice treated with Cr and Ni appeared healthy but was unsuitable for consumption because of toxic metal deposition.

Treatment
Cr and Nie0
Outcome
unfitness for consumption due to toxic metal depositione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The rice plants treated with Cr and Ni appeared healthy but were lethal, indicating unfitness for consumption due to toxic metal deposition”

✓ located verbatim in the source · abstract, characters 544–683 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Rice treated with more than 1 mM As died immediately.

Taxon
Oryza sativa L.Oryza sativat0
Treatment
> 1 mM Ase0
Outcome
instantaneously diede0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“the plants treated with > 1 mM As instantaneously died.”

✓ located verbatim in the source · abstract, characters 693–748 · show in text ↑
t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 165–180 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

DB1 inoculation significantly decreased rice shoot metal accumulation.

Treatment
DB1 inoculatione0
Interactor
DB1e0symbiont
Outcome
metal accumulation in the rice shootse0
Direction
decreasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“DB1 inoculation significantly decreased metal accumulation in the rice shoots.”

✓ located verbatim in the source · abstract, characters 773–851 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

With DB1, Cr uptake fell 16.55% under Cr stress.

Taxon
Oryza sativa L.Oryza sativat0
Treatment
Cr + DB1e0
Interactor
DB1e0symbiont
Outcome
Cr uptakee0
Direction
droppede0
Value
16.55%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Cr uptake dropped by 16.55% and 22.12% in (Cr + DB1) and (Cr + As + Ni + DB1), respectively”

✓ located verbatim in the source · abstract, characters 866–957 · show in text ↑
t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 165–180 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

With DB1, Cr uptake fell 22.12% under combined metal stress.

Taxon
Oryza sativa L.Oryza sativat0
Treatment
Cr + As + Ni + DB1e0
Interactor
DB1e0symbiont
Outcome
Cr uptakee0
Direction
droppede0
Value
22.12%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Cr uptake dropped by 16.55% and 22.12% in (Cr + DB1) and (Cr + As + Ni + DB1), respectively”

✓ located verbatim in the source · abstract, characters 866–957 · show in text ↑
t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 165–180 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

With DB1, As uptake fell 48.90% under As stress.

Taxon
Oryza sativa L.Oryza sativat0
Treatment
As + DB1e0
Interactor
DB1e0symbiont
Outcome
Ase0
Direction
droppede0
Value
48.90%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“As dropped by 48.90% and 35.82% in (As + DB1) and (Cr + As + Ni + DB1), respectively”

✓ located verbatim in the source · abstract, characters 959–1043 · show in text ↑
t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 165–180 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

With DB1, As uptake fell 35.82% under combined metal stress.

Taxon
Oryza sativa L.Oryza sativat0
Treatment
Cr + As + Ni + DB1e0
Interactor
DB1e0symbiont
Outcome
Ase0
Direction
droppede0
Value
35.82%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“As dropped by 48.90% and 35.82% in (As + DB1) and (Cr + As + Ni + DB1), respectively”

✓ located verbatim in the source · abstract, characters 959–1043 · show in text ↑
t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 165–180 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

With DB1, Ni uptake fell 7.95% under Ni stress.

Taxon
Oryza sativa L.Oryza sativat0
Treatment
Ni + DB1e0
Interactor
DB1e0symbiont
Outcome
Nie0
Direction
droppede0
Value
7.95%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Ni dropped by 7.95% and 19.56% in (Ni + DB1) and (Cr + As + Ni + DB1), respectively.”

✓ located verbatim in the source · abstract, characters 1049–1133 · show in text ↑
t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 165–180 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

With DB1, Ni uptake fell 19.56% under combined metal stress.

Taxon
Oryza sativa L.Oryza sativat0
Treatment
Cr + As + Ni + DB1e0
Interactor
DB1e0symbiont
Outcome
Nie0
Direction
droppede0
Value
19.56%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Ni dropped by 7.95% and 19.56% in (Ni + DB1) and (Cr + As + Ni + DB1), respectively.”

✓ located verbatim in the source · abstract, characters 1049–1133 · show in text ↑
t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 165–180 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

DB1 inoculation significantly decreased OsPCS1 expression.

Taxon
Oryza sativa L.Oryza sativat0
Treatment
DB1 inoculatione0
Interactor
DB1e0symbiont
Gene
OsPCS1e0
Outcome
expression of OsPCS1e0
Direction
decreasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“DB1 inoculation significantly decreased the expression of OsPCS1 (a phytochelatin synthase gene), OsMTP1 (a metal transporting gene), and OsMTP5 (a gene for the expulsion of excess metal).”

✓ located verbatim in the source · abstract, characters 1227–1415 · show in text ↑
t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 165–180 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

DB1 inoculation significantly decreased OsMTP1 expression.

Taxon
Oryza sativa L.Oryza sativat0
Treatment
DB1 inoculatione0
Interactor
DB1e0symbiont
Gene
OsMTP1e0
Outcome
OsMTP1e0
Direction
decreasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“DB1 inoculation significantly decreased the expression of OsPCS1 (a phytochelatin synthase gene), OsMTP1 (a metal transporting gene), and OsMTP5 (a gene for the expulsion of excess metal).”

✓ located verbatim in the source · abstract, characters 1227–1415 · show in text ↑
t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 165–180 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

DB1 inoculation significantly decreased OsMTP5 expression.

Taxon
Oryza sativa L.Oryza sativat0
Treatment
DB1 inoculatione0
Interactor
DB1e0symbiont
Gene
OsMTP5e0
Outcome
OsMTP5e0
Direction
decreasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“DB1 inoculation significantly decreased the expression of OsPCS1 (a phytochelatin synthase gene), OsMTP1 (a metal transporting gene), and OsMTP5 (a gene for the expulsion of excess metal).”

✓ located verbatim in the source · abstract, characters 1227–1415 · show in text ↑
t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 165–180 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

DB1 inoculation enhanced rice morphological growth.

Treatment
DB1 inoculatione0
Interactor
DB1e0symbiont
Outcome
morphological growthe0
Direction
enhancede0
Qualifier
modulation of endogenous phytohormonese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“DB1 inoculation considerably enhanced the morphological growth of rice through modulation of endogenous phytohormones (abscisic acid, salicylic acid, and jasmonic acid) and uptake of essential elements such as K and P.”

✓ located verbatim in the source · abstract, characters 1426–1644 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

DB1 inoculation modulated endogenous phytohormones.

Treatment
DB1 inoculatione0
Interactor
DB1e0symbiont
Outcome
modulation of endogenous phytohormonese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“DB1 inoculation considerably enhanced the morphological growth of rice through modulation of endogenous phytohormones (abscisic acid, salicylic acid, and jasmonic acid) and uptake of essential elements such as K and P.”

✓ located verbatim in the source · abstract, characters 1426–1644 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

DB1 inoculation affected essential K and P uptake.

Treatment
DB1 inoculatione0
Interactor
DB1e0symbiont
Outcome
uptake of essential elements such as K and Pe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“DB1 inoculation considerably enhanced the morphological growth of rice through modulation of endogenous phytohormones (abscisic acid, salicylic acid, and jasmonic acid) and uptake of essential elements such as K and P.”

✓ located verbatim in the source · abstract, characters 1426–1644 · show in text ↑
Recommendationauthor interpretationoriginal resultpositivebasis n/a

Claim · model-written summary

The authors identify DB1 as a biofertilizer for mitigating heavy metal toxicity in rice.

Interactor
DB1e0symbiont
Outcome
effective biofertilizer that can mitigate heavy metal toxicitye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“DB1 is an effective biofertilizer that can mitigate heavy metal toxicity in rice crops.”

✓ located verbatim in the source · abstract, characters 1674–1761 · show in text ↑

nickel atom · nutrient: content · Oryza sativa (rice)Results differ

8 papers: 2 positive, 6 negative or no effect

1 paper in the same direction as this paper · 6 in the opposite direction

  1. negative
  2. negative
  3. no effect

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chromium atom · nutrient: content · Oryza sativa (rice)Positive and negative results

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  1. negative
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arsenic atom · nutrient: content · Oryza sativa (rice)Positive and negative results

17 papers: 6 positive, 11 negative or no effect

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  1. negative
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inoculation · molecular: expression · Oryza sativa (rice)Positive and negative results

56 papers: 51 positive, 5 negative or no effect

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  1. no effect
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inoculation · molecular: metabolites · Oryza sativa (rice)Positive and negative results

78 papers: 72 positive, 6 negative or no effect

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  1. no effect
  2. no effect
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inoculation · growth · Oryza sativa (rice)Positive and negative results

399 papers: 362 positive, 37 negative or no effect

361 papers in the same direction as this paper · 34 in the opposite direction · 3 reporting no difference from an alternative

  1. positive
  2. no effect
  3. negative

395 papers more in this group

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.