Paper · 2023 · Phytobiomes Journal

CRISPR/Cas9-Mediated Mutagenesis of Carotenoid Cleavage Dioxygenase (CCD) Genes in Sorghum Alters Strigolactone Biosynthesis and Plant Biotic Interactions

Jingjie Hao; Ying Yang; Stephanie Futrell; et al.

8
claims
8
verbatim quotes
16
citations
5
research areas
✓
Open access

Abstract

Strigolactones are a group of small molecules that play critical roles in plant developmental processes and root biotic interactions. Strigolactones are agronomically important due to their role as a signal for the germination of a parasitic weed ( Striga spp.) that reduces yields of cereal crops worldwide. To identify the genes encoding strigolactones in sorghum and their function, we characterized two CRISPR/Cas9-mediated gene knockouts of carotenoid cleavage dioxygenase 8 ( CCD8) genes ( SbCCD8a and SbCCD8b), which have been shown in other plant species to be involved in strigolactone biosynthesis. Although strigolactones are important for the parasitization of sorghum in Africa, the functions of members of the CCD8 family have not been characterized. The impact of the knockouts on strigolactone production, plant growth and development, resistance to the parasitic weed Striga, and the root-associated microbiomes were investigated in this study. The results revealed that knockout of SbCCD8 genes in sorghum significantly reduced orobanchol production and Striga germination. Strigolactone deficiency altered the shoot and root architecture and reduced grain yield of sorghum. The knockout of the SbCCD8b gene significantly affected the rhizosphere bacterial diversity and community composition at sorghum plant grain-fill stage due to the abolition of orobanchol exudation from roots. Reduced amounts of orobanchol in root exudates also influenced root-associated fungal taxa abundance. Our findings provide new insights into potentially sustainable approaches for the recruitment of beneficial microbes and for parasitic weed control through manipulation of strigolactone production in sorghum.

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Claims 8

Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

SbCCD8 knockout reduced sorghum orobanchol production.

Taxon
sorghumSorghume0
Treatment
knockout of SbCCD8 genese0
Gene
SbCCD8e0
Outcome
orobanchol productione0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e0

“knockout of SbCCD8 genes in sorghum significantly reduced orobanchol production and Striga germination”

✓ located verbatim in the source · abstract, characters 988–1090 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

SbCCD8 knockout reduced Striga germination.

Taxon
sorghumSorghume0
Treatment
knockout of SbCCD8 genese0
Interactor
StrigaStrigae0parasite
Gene
SbCCD8e0
Outcome
Striga germinatione0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗
Striga
Striga · Interactor · picture of the genus (one of its species)Marco Schmidt [1] · CC BY-SA 2.5 · Wikimedia Commons ↗

Verbatim

e0

“knockout of SbCCD8 genes in sorghum significantly reduced orobanchol production and Striga germination”

✓ located verbatim in the source · abstract, characters 988–1090 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Strigolactone deficiency altered sorghum shoot and root architecture.

Taxon
sorghumSorghume0
Treatment
Strigolactone deficiencye0
Outcome
shoot and root architecturee0
Direction
alterede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e0

“Strigolactone deficiency altered the shoot and root architecture and reduced grain yield of sorghum”

✓ located verbatim in the source · abstract, characters 1092–1191 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Strigolactone deficiency reduced sorghum grain yield.

Taxon
sorghumSorghume0
Treatment
Strigolactone deficiencye0
Outcome
grain yielde0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e0

“Strigolactone deficiency altered the shoot and root architecture and reduced grain yield of sorghum”

✓ located verbatim in the source · abstract, characters 1092–1191 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

SbCCD8b knockout affected rhizosphere bacterial diversity and community composition at grain fill.

Taxon
sorghumSorghume0
Organ / stage
grain-fill stagee0
Treatment
knockout of the SbCCD8b genee0
Interactor
rhizosphere bacteriale0symbiont
Gene
SbCCD8be0
Outcome
rhizosphere bacterial diversity and community compositione0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e0

“knockout of the SbCCD8b gene significantly affected the rhizosphere bacterial diversity and community composition at sorghum plant grain-fill stage due to the abolition of orobanchol exudation from roots”

✓ located verbatim in the source · abstract, characters 1197–1400 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Reduced orobanchol in root exudates influenced root-associated fungal abundance.

Interactor
root-associated fungal taxae0symbiont
Compound
orobanchole0
Outcome
root-associated fungal taxa abundancee0
Direction
influencede0

Not reportedTaxon

Verbatim

e0

“Reduced amounts of orobanchol in root exudates also influenced root-associated fungal taxa abundance”

✓ located verbatim in the source · abstract, characters 1402–1502 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Abolition of orobanchol exudation was attributed as the cause of the bacterial community change.

Taxon
sorghumSorghume0
Interactor
rhizosphere bacteriale0symbiont
Compound
orobanchole0
Outcome
rhizosphere bacterial diversity and community compositione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e0

“rhizosphere bacterial diversity and community composition at sorghum plant grain-fill stage due to the abolition of orobanchol exudation from roots”

✓ located verbatim in the source · abstract, characters 1253–1400 · show in text ↑
Recommendationauthor interpretationoriginal resultpositivebasis n/a

Claim · model-written summary

Manipulating strigolactone production may support beneficial microbe recruitment and parasitic weed control.

Taxon
sorghumSorghume0
Treatment
manipulation of strigolactone productione0
Outcome
recruitment of beneficial microbes and for parasitic weed controle0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e0

“potentially sustainable approaches for the recruitment of beneficial microbes and for parasitic weed control through manipulation of strigolactone production in sorghum”

✓ located verbatim in the source · abstract, characters 1543–1711 · show in text ↑

class · yield · SorghumPositive and negative results

7 papers: 4 positive, 3 negative or no effect

2 papers in the same direction as this paper · 4 in the opposite direction

  1. positive
  2. positive
  3. positive

3 papers more in this group

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.