Paper · 2023 · South African Journal of Botany

Insights concerning advancing the agroecological sustainability of salinity tolerance through proteomics profiling of hexaploid wheat (Triticum aestivum L.)

Waqif Khan; Adnan Khan; Abd Ullah; et al.

9
claims
18
verbatim quotes
14
citations
2
research areas
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Open access · cc-by

Abstract

Wheat plays a significant role in the provision of food and nutrition. However, rapid soil salinization poses a severe threat to its production worldwide. Salt stress stunts wheat growth and quality, resulting in low grain yields. The adaptation of wheat to salinity involves complex physio-biochemical and molecular mechanisms. This study aimed to identify the genetic approaches concerning salt stress-responsive proteins and protein pathways in wheat roots under controlled (0 mM) and NaCl stress (250 mM) solution using label-free proteomic quantification analysis. We found a significant accumulation of Na+ in the leaf and root compared with the controlled condition. Besides, we identified 2436 proteins enhanced under salt stress, with 198 differentially abundant proteins (DAPs), including 170 up-regulated and 28 down-regulated proteins. Many of these proteins were involved in salinity tolerance, including heat shock proteins, glutathione S-transferase, dehydrin, peroxidase, potassium channel beta subunit-type H+-ATPase, superoxide dismutase (Cu-Zn), 14-3-3 protein, peroxidase, malate dehydrogenase, and heat shock proteins. The abundance of a V-type H+ ATPase and 14-3-3 protein was also enhanced, facilitating Na+ compartmentalization in the vacuole through the salt overly sensitive (SOS) pathway. Additionally, many antioxidant enzymes, including peroxidase, glutathione-S-transferase, and thioredoxins, were up-regulated, playing a vital role in detoxifying reactive oxygen species (ROS) in salinity-stressed wheat roots. Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) enrichment analyses showed that salinity stress enhances the abundance of proteins in several metabolic pathways, such as the citrate cycle, ribosome, oxidative phosphorylation, glycolysis, carbon metabolism, and cytoplasm. We anticipate that the identified proteins under salinity conditions will provide us with a deeper understanding of their application in agriculture biotechnology.

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Claims 9

Intervention effectobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

Salt stress significantly increased Na+ accumulation in leaves and roots.

Organ / stage
leaf and roote0
Outcome
accumulation of Na+ in the leaf and roote0
Direction
accumulatione0
Comparator
controlled conditione0

Not reportedTreatment

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“We found a significant accumulation of Na+ in the leaf and root compared with the controlled condition.”

✓ located verbatim in the source · abstract, characters 570–673 · show in text ↑
t0

“proteomics profiling of hexaploid wheat (Triticum aestivum L.)”

✓ located verbatim in the source · title, characters 94–156 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Under salt stress, 2436 proteins were enhanced.

Treatment
salt stresse0
Outcome
proteinse0
Direction
enhancede0
Value
2436 proteinse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“we identified 2436 proteins enhanced under salt stress”

✓ located verbatim in the source · abstract, characters 683–737 · show in text ↑
t0

“proteomics profiling of hexaploid wheat (Triticum aestivum L.)”

✓ located verbatim in the source · title, characters 94–156 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Salt stress yielded 198 differentially abundant proteins.

Outcome
differentially abundant proteinse0
Value
198 differentially abundant proteinse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“with 198 differentially abundant proteins (DAPs)”

✓ located verbatim in the source · abstract, characters 739–787 · show in text ↑
t0

“proteomics profiling of hexaploid wheat (Triticum aestivum L.)”

✓ located verbatim in the source · title, characters 94–156 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

There were 170 up-regulated proteins under salt stress.

Outcome
proteinse0
Direction
up-regulatede0
Value
170 up-regulatede0

Not reportedTreatmentComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“including 170 up-regulated and 28 down-regulated proteins”

✓ located verbatim in the source · abstract, characters 789–846 · show in text ↑
t0

“proteomics profiling of hexaploid wheat (Triticum aestivum L.)”

✓ located verbatim in the source · title, characters 94–156 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

There were 28 down-regulated proteins under salt stress.

Outcome
proteinse0
Direction
down-regulatede0
Value
28 down-regulatede0

Not reportedTreatmentComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“including 170 up-regulated and 28 down-regulated proteins”

✓ located verbatim in the source · abstract, characters 789–846 · show in text ↑
t0

“proteomics profiling of hexaploid wheat (Triticum aestivum L.)”

✓ located verbatim in the source · title, characters 94–156 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

V-type H+ ATPase abundance was enhanced.

Gene
V-type H+ ATPasee0
Outcome
abundancee0
Direction
enhancede0

Not reportedTreatmentComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The abundance of a V-type H+ ATPase and 14-3-3 protein was also enhanced”

✓ located verbatim in the source · abstract, characters 1140–1212 · show in text ↑
t0

“proteomics profiling of hexaploid wheat (Triticum aestivum L.)”

✓ located verbatim in the source · title, characters 94–156 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

14-3-3 protein abundance was enhanced.

Gene
14-3-3 proteine0
Outcome
abundancee0
Direction
enhancede0

Not reportedTreatmentComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The abundance of a V-type H+ ATPase and 14-3-3 protein was also enhanced”

✓ located verbatim in the source · abstract, characters 1140–1212 · show in text ↑
t0

“proteomics profiling of hexaploid wheat (Triticum aestivum L.)”

✓ located verbatim in the source · title, characters 94–156 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Antioxidant enzymes were up-regulated in salt-stressed wheat roots.

Gene
peroxidase, glutathione-S-transferase, and thioredoxinse0
Outcome
antioxidant enzymese0
Direction
up-regulatede0

Not reportedTreatmentComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“many antioxidant enzymes, including peroxidase, glutathione-S-transferase, and thioredoxins, were up-regulated”

✓ located verbatim in the source · abstract, characters 1330–1440 · show in text ↑
t0

“proteomics profiling of hexaploid wheat (Triticum aestivum L.)”

✓ located verbatim in the source · title, characters 94–156 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Salt stress enhanced proteins in several metabolic pathways.

Treatment
salinity stresse0
Outcome
abundance of proteins in several metabolic pathwayse0
Direction
enhancese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“salinity stress enhances the abundance of proteins in several metabolic pathways, such as the citrate cycle, ribosome, oxidative phosphorylation, glycolysis, carbon metabolism, and cytoplasm.”

✓ located verbatim in the source · abstract, characters 1644–1835 · show in text ↑
t0

“proteomics profiling of hexaploid wheat (Triticum aestivum L.)”

✓ located verbatim in the source · title, characters 94–156 · show in text ↑