Paper · 2022 · The Plant Journal

Endogenous auxin maintains embryonic cell identity and promotes somatic embryo development in Arabidopsis

Omid Karami; Cheryl Philipsen; Arezoo Rahimi; et al.

8
claims
15
verbatim quotes
61
citations
3
research areas
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Open access · cc-by

Abstract

Somatic embryogenesis (SE), or embryo development from in vitro cultured vegetative explants, can be induced in Arabidopsis by the synthetic auxin 2,4-dichlorophenoxyacetic acid (2,4-D) or by overexpression of specific transcription factors, such as AT-HOOK MOTIF NUCLEAR LOCALIZED 15 (AHL15). Here, we explored the role of endogenous auxin [indole-3-acetic acid (IAA)] during 2,4-D and AHL15-induced SE. Using the pWOX2:NLS-YFP reporter, we identified three distinct developmental stages for 2,4-D and AHL15-induced SE in Arabidopsis, with these being (i) acquisition of embryo identity; (ii) formation of pro-embryos; and (iii) somatic embryo patterning and development. The acquisition of embryo identity coincided with enhanced expression of the indole-3-pyruvic acid auxin biosynthesis YUCCA genes, resulting in an enhanced pDR5:GFP-reported auxin response in the embryo-forming tissues. Chemical inhibition of the indole-3-pyruvic acid pathway did not affect the acquisition of embryo identity, but significantly reduced or completely inhibited the formation of pro-embryos. Co-application of IAA with auxin biosynthesis inhibitors in the AHL15-induced SE system rescued differentiated somatic embryo formation, confirming that increased IAA levels are important during the last two stages of SE. Our analyses also showed that polar auxin transport, with AUXIN/LIKE-AUX influx and PIN-FORMED1 efflux carriers as important drivers, is required for the transition of embryonic cells to proembryos and, later, for correct cell fate specification and differentiation. Taken together, our results indicate that endogenous IAA biosynthesis and its polar transport are not required for the acquisition of embryo identity, but rather to maintain embryonic cell identity and for the formation of multicellular proembryos and their development into histodifferentiated embryos.

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Claims 8

Observationobservedoriginal resultmeasured

Claim · model-written summary

Reporter analysis identified three stages of induced somatic embryogenesis: embryo identity, pro-embryos, and patterning and development.

Taxon
ArabidopsisArabidopsise0
Treatment
2,4-D and AHL15-induced SEe0
Outcome
three distinct developmental stagese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“three distinct developmental stages for 2,4-D and AHL15-induced SE in Arabidopsis, with these being (i) acquisition of embryo identity; (ii) formation of pro-embryos; and (iii) somatic embryo patterning and development.”

✓ located verbatim in the source · abstract, characters 453–672 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Acquisition of embryo identity coincided with enhanced YUCCA expression.

Taxon
ArabidopsisArabidopsise0
Organ / stage
acquisition of embryo identitye1
Gene
YUCCA genese1
Outcome
enhanced expressione1
Direction
enhancede1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“2,4-D and AHL15-induced SE in Arabidopsis”

✓ located verbatim in the source · abstract, characters 493–534 · show in text ↑
e1

“The acquisition of embryo identity coincided with enhanced expression of the indole-3-pyruvic acid auxin biosynthesis YUCCA genes”

✓ located verbatim in the source · abstract, characters 673–802 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Acquisition of embryo identity coincided with enhanced auxin response in embryo-forming tissues.

Taxon
ArabidopsisArabidopsise0
Organ / stage
embryo-forming tissuese1
Gene
pDR5:GFPe1
Outcome
auxin responsee1
Direction
enhancede1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“2,4-D and AHL15-induced SE in Arabidopsis”

✓ located verbatim in the source · abstract, characters 493–534 · show in text ↑
e1

“resulting in an enhanced pDR5:GFP-reported auxin response in the embryo-forming tissues”

✓ located verbatim in the source · abstract, characters 804–891 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Inhibiting the indole-3-pyruvic acid pathway did not affect embryo identity acquisition.

Taxon
ArabidopsisArabidopsise0
Treatment
Chemical inhibition of the indole-3-pyruvic acid pathwaye1
Outcome
acquisition of embryo identitye1
Direction
did not affecte1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“2,4-D and AHL15-induced SE in Arabidopsis”

✓ located verbatim in the source · abstract, characters 493–534 · show in text ↑
e1

“Chemical inhibition of the indole-3-pyruvic acid pathway did not affect the acquisition of embryo identity”

✓ located verbatim in the source · abstract, characters 893–999 · show in text ↑
Intervention effectobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

Inhibiting the indole-3-pyruvic acid pathway significantly reduced or eliminated pro-embryo formation.

Taxon
ArabidopsisArabidopsise0
Treatment
Chemical inhibition of the indole-3-pyruvic acid pathwaye1
Outcome
formation of pro-embryose1
Direction
reduced or completely inhibitede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“2,4-D and AHL15-induced SE in Arabidopsis”

✓ located verbatim in the source · abstract, characters 493–534 · show in text ↑
e1

“Chemical inhibition of the indole-3-pyruvic acid pathway did not affect the acquisition of embryo identity, but significantly reduced or completely inhibited the formation of pro-embryos.”

✓ located verbatim in the source · abstract, characters 893–1080 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Adding IAA with biosynthesis inhibitors rescued differentiated embryo formation in the AHL15 system.

Taxon
ArabidopsisArabidopsise0
Treatment
Co-application of IAA with auxin biosynthesis inhibitorse1
Outcome
differentiated somatic embryo formatione1
Direction
rescuede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“2,4-D and AHL15-induced SE in Arabidopsis”

✓ located verbatim in the source · abstract, characters 493–534 · show in text ↑
e1

“Co-application of IAA with auxin biosynthesis inhibitors in the AHL15-induced SE system rescued differentiated somatic embryo formation”

✓ located verbatim in the source · abstract, characters 1081–1216 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Polar auxin transport was required for transition of embryonic cells to proembryos.

Taxon
ArabidopsisArabidopsise0
Gene
AUXIN/LIKE-AUX influx and PIN-FORMED1 efflux carrierse1
Outcome
transition of embryonic cells to proembryose1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“2,4-D and AHL15-induced SE in Arabidopsis”

✓ located verbatim in the source · abstract, characters 493–534 · show in text ↑
e1

“polar auxin transport, with AUXIN/LIKE-AUX influx and PIN-FORMED1 efflux carriers as important drivers, is required for the transition of embryonic cells to proembryos”

✓ located verbatim in the source · abstract, characters 1333–1500 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Polar auxin transport was required for correct cell fate specification and differentiation.

Taxon
ArabidopsisArabidopsise0
Gene
AUXIN/LIKE-AUX influx and PIN-FORMED1 efflux carrierse1
Outcome
correct cell fate specification and differentiatione1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“2,4-D and AHL15-induced SE in Arabidopsis”

✓ located verbatim in the source · abstract, characters 493–534 · show in text ↑
e1

“polar auxin transport, with AUXIN/LIKE-AUX influx and PIN-FORMED1 efflux carriers as important drivers, is required for the transition of embryonic cells to proembryos and, later, for correct cell fate specification and differentiation.”

✓ located verbatim in the source · abstract, characters 1333–1569 · show in text ↑

indole-3-acetic acid · growth · ArabidopsisPositive and negative results

10 papers: 9 positive, 1 negative or no effect

8 papers in the same direction as this paper · 1 in the opposite direction

  1. negative
  2. positive
  3. positive

6 papers more in this group

See all 10 papers →

class · growth · ArabidopsisPositive and negative results

70 papers: 42 positive, 28 negative or no effect

41 papers in the same direction as this paper · 28 in the opposite direction

  1. positive
  2. negative
  3. negative

66 papers more in this group

See all 70 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.