Paper · 2022 · PLANT PHYSIOLOGY

Ethylene response factor ERF.D7 activates auxin response factor 2 paralogs to regulate tomato fruit ripening

Priya Gambhir; Vijendra Singh; Adwaita Parida; et al.

9
claims
18
verbatim quotes
47
citations
3
research areas
✓
Open access · public-domain

Abstract

Despite the obligatory role of ethylene in climacteric fruit ripening and the identification of 77 ethylene response factors (ERFs) in the tomato (Solanum lycopersicum) genome, the role of few ERFs has been validated in the ripening process. Here, using a comprehensive morpho-physiological, molecular, and biochemical approach, we demonstrate the regulatory role of ERF D7 (SlERF.D7) in tomato fruit ripening. SlERF.D7 expression positively responded to exogenous ethylene and auxin treatments, most likely in a ripening inhibitor-independent manner. SlERF.D7 overexpression (OE) promoted ripening, and its silencing had the opposite effect. Alterations in its expression modulated ethylene production, pigment accumulation, and fruit firmness. Consistently, genes involved in ethylene biosynthesis and signaling, lycopene biosynthesis, and cell wall loosening were upregulated in the OE lines and downregulated in RNAi lines. These transgenic lines also accumulated altered levels of indole-3-acetic acid at late-breaker stages. A positive association between auxin response factor 2 (ARF2) paralog's transcripts and SlERF.D7 mRNA levels and that SlARF2A and SlARF2B are direct targets of SlERF.D7 underpinned the perturbed auxin-ethylene crosstalk for the altered ripening program observed in the transgenic fruits. Overall, this study uncovers that SlERF.D7 positively regulates SlARF2A/B abundance to amalgamate auxin and ethylene signaling pathways for controlling tomato fruit ripening.

Abstract from the paper’s OpenAlex record; open copy licensed public-domain. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 9

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

SlERF.D7 expression responded positively to ethylene and auxin treatments.

Treatment
exogenous ethylene and auxin treatmentse0
Gene
SlERF.D7e0
Outcome
SlERF.D7 expressione0
Direction
positively respondede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“SlERF.D7 expression positively responded to exogenous ethylene and auxin treatments”

✓ located verbatim in the source · abstract, characters 411–494 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 87–93 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

SlERF.D7 overexpression promoted tomato ripening.

Treatment
SlERF.D7 overexpression (OE)e0
Gene
SlERF.D7e0
Outcome
ripeninge0
Direction
promotede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“SlERF.D7 overexpression (OE) promoted ripening”

✓ located verbatim in the source · abstract, characters 552–598 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 87–93 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

SlERF.D7 silencing had the opposite effect on ripening.

Treatment
its silencinge0
Outcome
ripeninge0
Direction
opposite effecte0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“SlERF.D7 overexpression (OE) promoted ripening, and its silencing had the opposite effect”

✓ located verbatim in the source · abstract, characters 552–641 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 87–93 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Altering SlERF.D7 expression modulated ethylene production, pigment accumulation, and fruit firmness.

Outcome
ethylene production, pigment accumulation, and fruit firmnesse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Alterations in its expression modulated ethylene production, pigment accumulation, and fruit firmness”

✓ located verbatim in the source · abstract, characters 643–744 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 87–93 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Ethylene biosynthesis and signaling genes were upregulated in OE lines.

Material
OE linese0
Outcome
genes involved in ethylene biosynthesis and signaling, lycopene biosynthesis, and cell wall looseninge0
Direction
upregulatede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“genes involved in ethylene biosynthesis and signaling, lycopene biosynthesis, and cell wall loosening were upregulated in the OE lines and downregulated in RNAi lines”

✓ located verbatim in the source · abstract, characters 760–926 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 87–93 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The same genes were downregulated in RNAi lines.

Material
RNAi linese0
Outcome
genes involved in ethylene biosynthesis and signaling, lycopene biosynthesis, and cell wall looseninge0
Direction
downregulatede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“genes involved in ethylene biosynthesis and signaling, lycopene biosynthesis, and cell wall loosening were upregulated in the OE lines and downregulated in RNAi lines”

✓ located verbatim in the source · abstract, characters 760–926 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 87–93 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Transgenic lines had altered indole-3-acetic acid levels at late breaker stage.

Material
transgenic linese0
Organ / stage
late-breaker stagese0
Outcome
levels of indole-3-acetic acide0
Direction
alterede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“These transgenic lines also accumulated altered levels of indole-3-acetic acid at late-breaker stages”

✓ located verbatim in the source · abstract, characters 928–1029 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 87–93 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

ARF2 paralog transcripts were positively associated with SlERF.D7 mRNA levels.

Gene
SlERF.D7e0
Outcome
auxin response factor 2 (ARF2) paralog's transcriptse0
Direction
positivee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“A positive association between auxin response factor 2 (ARF2) paralog's transcripts and SlERF.D7 mRNA levels”

✓ located verbatim in the source · abstract, characters 1031–1139 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 87–93 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

SlARF2A and SlARF2B are direct SlERF.D7 targets.

Gene
SlERF.D7e0
Outcome
SlARF2A and SlARF2B are direct targetse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“SlARF2A and SlARF2B are direct targets of SlERF.D7”

✓ located verbatim in the source · abstract, characters 1149–1199 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 87–93 · show in text ↑

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54 papers: 21 positive, 33 negative or no effect

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.