Paper · 2022 · Frontiers in Plant Science

Transcriptomic and metabolomic reveals silicon enhances adaptation of rice under dry cultivation by improving flavonoid biosynthesis, osmoregulation, and photosynthesis

Hao Jiang; Ze Song; Qing-Wang Su; et al.

16
claims
24
verbatim quotes
31
citations
3
research areas
✓
Open access · cc-by

Abstract

Dry cultivation is a new rice crop mode used to alleviate water shortage and develop water-saving agriculture. There is obvious genetic difference compared with drought-tolerant rice. Silicon (Si) plays an important role in plant adaptation to adverse environmental conditions and can significantly improve the drought tolerance and yield of rice. However, the regulatory mechanism via which Si provides plant tolerance or adaptation under dry cultivation is not well understood. The present study investigated the changes in plant growth, photosynthetic gas exchange, and oxidative stress of the rice cultivar "Suijing 18" under dry cultivation. Si improved photosynthetic performance and antioxidant enzyme activity and subsequently reduced lipid peroxidation of rice seedlings, promoted LAI and promoted leaf growth under dry cultivation. Further, transcriptomics combined with quasi-targeted metabolomics detected 1416 and 520 differentially expressed genes (DEGs), 38 and 41 differentially accumulated metabolites (DAMs) in the rice leaves and roots, respectively. Among them, 13 DEGs were involved in flavonoid biosynthesis, promoting the accumulation of flavonoids, anthocyanins, and flavonols in the roots and leaves of rice under dry cultivation. Meanwhile, 14 DEGs were involved in photosynthesis, promoting photosystem I and photosystem II responses, increasing the abundance of metabolites in leaves. On the other hand, 24 DAMs were identified involved in osmoregulatory processes, significantly increasing amino acids and carbohydrates and their derivatives in roots. These results provide new insight into the role of Si in alleviating to adverse environmental, Si enhanced the accumulation of flavonoids and osmoregulatory metabolites, thereby alleviating drought effect on the roots. On the other hand, improving dehydration resistance of leaves, guaranteeing normal photosynthesis and downward transport of organic matter. In conclusion, Si promoted the coordinated action between the above-ground and below-ground plant parts, improved the root/shoot ratio (R/S) of rice and increased the sugar content and enhancing rice adaptability under dry cultivation conditions. The establishment of the system for increasing the yield of rice under dry cultivation provides theoretical and technical support thereby promoting the rapid development of rice in Northeast China, and ensuring national food security.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 16

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Silicon improved rice seedling photosynthetic performance and antioxidant enzyme activity.

Organ / stage
seedlingse0
Treatment
Sie0
Outcome
photosynthetic performance and antioxidant enzyme activitye0
Direction
improvede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Si improved photosynthetic performance and antioxidant enzyme activity and subsequently reduced lipid peroxidation of rice seedlings, promoted LAI and promoted leaf growth under dry cultivation.”

✓ located verbatim in the source · abstract, characters 647–841 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Silicon reduced lipid peroxidation in rice seedlings.

Organ / stage
seedlingse0
Treatment
Sie0
Outcome
lipid peroxidatione0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Si improved photosynthetic performance and antioxidant enzyme activity and subsequently reduced lipid peroxidation of rice seedlings, promoted LAI and promoted leaf growth under dry cultivation.”

✓ located verbatim in the source · abstract, characters 647–841 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Silicon promoted rice leaf area index and leaf growth.

Organ / stage
leafe0
Treatment
Sie0
Outcome
LAI and promoted leaf growthe0
Direction
promotede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Si improved photosynthetic performance and antioxidant enzyme activity and subsequently reduced lipid peroxidation of rice seedlings, promoted LAI and promoted leaf growth under dry cultivation.”

✓ located verbatim in the source · abstract, characters 647–841 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Transcriptomic analysis found 1416 differentially expressed genes in rice leaves.

Organ / stage
leavese0
Outcome
differentially expressed genes (DEGs)e0
Value
1416e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“transcriptomics combined with quasi-targeted metabolomics detected 1416 and 520 differentially expressed genes (DEGs), 38 and 41 differentially accumulated metabolites (DAMs) in the rice leaves and roots, respectively.”

✓ located verbatim in the source · abstract, characters 851–1069 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 70–74 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Transcriptomic analysis found 520 differentially expressed genes in rice roots.

Organ / stage
rootse0
Outcome
differentially expressed genes (DEGs)e0
Value
520e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“transcriptomics combined with quasi-targeted metabolomics detected 1416 and 520 differentially expressed genes (DEGs), 38 and 41 differentially accumulated metabolites (DAMs) in the rice leaves and roots, respectively.”

✓ located verbatim in the source · abstract, characters 851–1069 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 70–74 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Metabolomic analysis found 38 differentially accumulated metabolites in rice leaves.

Organ / stage
leavese0
Outcome
differentially accumulated metabolites (DAMs)e0
Value
38e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“transcriptomics combined with quasi-targeted metabolomics detected 1416 and 520 differentially expressed genes (DEGs), 38 and 41 differentially accumulated metabolites (DAMs) in the rice leaves and roots, respectively.”

✓ located verbatim in the source · abstract, characters 851–1069 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 70–74 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Metabolomic analysis found 41 differentially accumulated metabolites in rice roots.

Organ / stage
rootse0
Outcome
differentially accumulated metabolites (DAMs)e0
Value
41e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“transcriptomics combined with quasi-targeted metabolomics detected 1416 and 520 differentially expressed genes (DEGs), 38 and 41 differentially accumulated metabolites (DAMs) in the rice leaves and roots, respectively.”

✓ located verbatim in the source · abstract, characters 851–1069 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 70–74 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Thirteen differentially expressed genes were involved in rice flavonoid biosynthesis.

Organ / stage
roots and leavese0
Outcome
DEGs were involved in flavonoid biosynthesise0
Value
13e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“13 DEGs were involved in flavonoid biosynthesis, promoting the accumulation of flavonoids, anthocyanins, and flavonols in the roots and leaves of rice under dry cultivation.”

✓ located verbatim in the source · abstract, characters 1082–1255 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Flavonoids, anthocyanins, and flavonols accumulated in rice roots and leaves.

Organ / stage
roots and leavese0
Outcome
accumulation of flavonoids, anthocyanins, and flavonolse0
Direction
promotinge0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“13 DEGs were involved in flavonoid biosynthesis, promoting the accumulation of flavonoids, anthocyanins, and flavonols in the roots and leaves of rice under dry cultivation.”

✓ located verbatim in the source · abstract, characters 1082–1255 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Fourteen differentially expressed genes were involved in photosynthesis.

Outcome
DEGs were involved in photosynthesise0
Value
14e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“14 DEGs were involved in photosynthesis, promoting photosystem I and photosystem II responses, increasing the abundance of metabolites in leaves.”

✓ located verbatim in the source · abstract, characters 1267–1412 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 70–74 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Photosystem I and II responses and leaf metabolite abundance increased.

Organ / stage
leavese0
Outcome
photosystem I and photosystem II responsese0
Direction
promotinge0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“14 DEGs were involved in photosynthesis, promoting photosystem I and photosystem II responses, increasing the abundance of metabolites in leaves.”

✓ located verbatim in the source · abstract, characters 1267–1412 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 70–74 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Twenty-four differentially accumulated metabolites were involved in osmoregulation.

Organ / stage
rootse0
Outcome
DAMs were identified involved in osmoregulatory processese0
Value
24e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“24 DAMs were identified involved in osmoregulatory processes, significantly increasing amino acids and carbohydrates and their derivatives in roots.”

✓ located verbatim in the source · abstract, characters 1432–1580 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 70–74 · show in text ↑
Observationobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Root amino acids and carbohydrates increased significantly.

Organ / stage
rootse0
Outcome
amino acids and carbohydrates and their derivativese0
Direction
increasinge0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“24 DAMs were identified involved in osmoregulatory processes, significantly increasing amino acids and carbohydrates and their derivatives in roots.”

✓ located verbatim in the source · abstract, characters 1432–1580 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 70–74 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Silicon improved the rice root to shoot ratio under dry cultivation.

Treatment
Sie0
Outcome
root/shoot ratio (R/S)e0
Direction
improvede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Si promoted the coordinated action between the above-ground and below-ground plant parts, improved the root/shoot ratio (R/S) of rice and increased the sugar content and enhancing rice adaptability under dry cultivation conditions.”

✓ located verbatim in the source · abstract, characters 1955–2186 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Silicon increased rice sugar content under dry cultivation.

Treatment
Sie0
Outcome
sugar contente0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Si promoted the coordinated action between the above-ground and below-ground plant parts, improved the root/shoot ratio (R/S) of rice and increased the sugar content and enhancing rice adaptability under dry cultivation conditions.”

✓ located verbatim in the source · abstract, characters 1955–2186 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Silicon enhanced rice adaptability under dry cultivation.

Treatment
Sie0
Outcome
rice adaptabilitye0
Direction
enhancinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Si promoted the coordinated action between the above-ground and below-ground plant parts, improved the root/shoot ratio (R/S) of rice and increased the sugar content and enhancing rice adaptability under dry cultivation conditions.”

✓ located verbatim in the source · abstract, characters 1955–2186 · show in text ↑

silicon atom · physiology: oxidative · Oryza sativa (rice)Results differ

34 papers: 33 positive, 1 negative or no effect

32 papers in the same direction as this paper · 1 in the opposite direction

  1. no effect
  2. positive
  3. positive

30 papers more in this group

See all 34 papers →

silicon atom · growth · Oryza sativa (rice)Results differ

171 papers: 157 positive, 14 negative or no effect

156 papers in the same direction as this paper · 14 in the opposite direction

  1. no effect
  2. positive
  3. positive

167 papers more in this group

See all 171 papers →

silicon atom · soil: biology · Oryza sativa (rice)Positive and negative results

17 papers: 16 positive, 1 negative or no effect

15 papers in the same direction as this paper · 1 in the opposite direction

  1. positive
  2. positive
  3. negative

13 papers more in this group

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silicon atom · organism · Oryza sativa (rice)Positive and negative results

20 papers: 18 positive, 2 negative or no effect

17 papers in the same direction as this paper · 2 in the opposite direction

  1. negative
  2. no effect
  3. positive

16 papers more in this group

See all 20 papers →

silicon atom · quality: sugar starch · Oryza sativa (rice)Results agree

5 papers: 5 positive, 0 negative or no effect

4 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

1 paper more in this group

See all 5 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.