Paper · 2021 · Scientific Reports

Downregulation of Zn-transporters along with Fe and redox imbalance causes growth and photosynthetic disturbance in Zn-deficient tomato

Ahmad Humayan Kabir; Mst Salma Akther; Milan Skalicky; et al.

9
claims
20
verbatim quotes
34
citations
2
research areas
✓
Open access · cc-by

Abstract

Abstract Zinc (Zn) deficiency hinders growth and development in tomato. This study unveils the responses of how Zn starvation affects physiological and molecular processes in tomato. Zn deficiency negatively affected the biomass, cellular integrity, and chlorophyll synthesis in tomato. Also, Zn deficiency decreased the maximum yield of PSII, photosynthesis performance index and dissipation energy per active reaction center, although the antenna size, trapping energy efficiency and electron transport flux were stable in Zn-starved leaves. Further, Zn shortage caused a substantial reduction in Zn and Fe concentrations in both roots and shoots along with decreased root Fe-reductase activity accompanied by the downregulation of Fe-regulated transporter 1 , Zn transporter-like (LOC100037509) , and Zn transporter (LOC101255999) genes predicted to be localized in the root plasma membrane. The interactome partners of these Zn transporters are predominantly associated with root-specific metal transporter, ferric-chelate reductase, BHLH transcriptional regulator, and Zn metal ion transporters, suggesting that Zn homeostasis may be tightly linked to the Fe status along with BHLH transcription factor in Zn-deficient tomato. We also noticed elevated O 2 .− and H 2 O 2 due to Zn deficiency which was consistent with the inefficient antioxidant properties. These findings will be useful in the downstream approach to improve vegetable crops sensitive to Zn-deficiency.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 9

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Zn deficiency negatively affected the biomass, cellular integrity and chlorophyll synthesis of tomato.

Treatment
Zn deficiencye1
Outcome
biomass, cellular integrity, and chlorophyll synthesise1
Direction
negatively affectede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Downregulation of Zn-transporters along with Fe and redox imbalance causes growth and photosynthetic disturbance in Zn-deficient tomato”

✓ located verbatim in the source · title, characters 0–135 · show in text ↑
e1

“Zn deficiency negatively affected the biomass, cellular integrity, and chlorophyll synthesis in tomato”

✓ located verbatim in the source · abstract, characters 183–285 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Zn deficiency decreased the maximum yield of PSII, the photosynthesis performance index and dissipation energy per active reaction center.

Treatment
Zn deficiencye2
Outcome
maximum yield of PSII, photosynthesis performance index and dissipation energy per active reaction centere2
Direction
decreasede2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Downregulation of Zn-transporters along with Fe and redox imbalance causes growth and photosynthetic disturbance in Zn-deficient tomato”

✓ located verbatim in the source · title, characters 0–135 · show in text ↑
e2

“Zn deficiency decreased the maximum yield of PSII, photosynthesis performance index and dissipation energy per active reaction center”

✓ located verbatim in the source · abstract, characters 293–426 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Antenna size, trapping energy efficiency and electron transport flux were stable in Zn-starved leaves.

Organ / stage
leavese2
Treatment
Zn-starvede2
Outcome
antenna size, trapping energy efficiency and electron transport fluxe2
Direction
stablee2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Downregulation of Zn-transporters along with Fe and redox imbalance causes growth and photosynthetic disturbance in Zn-deficient tomato”

✓ located verbatim in the source · title, characters 0–135 · show in text ↑
e2

“although the antenna size, trapping energy efficiency and electron transport flux were stable in Zn-starved leaves”

✓ located verbatim in the source · abstract, characters 428–542 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Zn shortage substantially reduced Zn and Fe concentrations in both roots and shoots of tomato.

Organ / stage
roots and shootse3
Treatment
Zn shortagee3
Outcome
Zn and Fe concentrationse3
Direction
reductione3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Downregulation of Zn-transporters along with Fe and redox imbalance causes growth and photosynthetic disturbance in Zn-deficient tomato”

✓ located verbatim in the source · title, characters 0–135 · show in text ↑
e3

“Zn shortage caused a substantial reduction in Zn and Fe concentrations in both roots and shoots”

✓ located verbatim in the source · abstract, characters 553–648 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Zn shortage decreased root Fe-reductase activity.

Organ / stage
roote4
Treatment
Zn shortagee3
Outcome
root Fe-reductase activitye4
Direction
decreasede4

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Downregulation of Zn-transporters along with Fe and redox imbalance causes growth and photosynthetic disturbance in Zn-deficient tomato”

✓ located verbatim in the source · title, characters 0–135 · show in text ↑
e3

“Zn shortage caused a substantial reduction in Zn and Fe concentrations in both roots and shoots”

✓ located verbatim in the source · abstract, characters 553–648 · show in text ↑
e4

“along with decreased root Fe-reductase activity”

✓ located verbatim in the source · abstract, characters 649–696 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Zn shortage downregulated Fe-regulated transporter 1 and Zn transporter genes predicted to localize to the root plasma membrane.

Organ / stage
root plasma membranee4
Treatment
Zn shortagee3
Gene
Fe-regulated transporter 1e4
Outcome
downregulatione4
Direction
downregulatione4

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Downregulation of Zn-transporters along with Fe and redox imbalance causes growth and photosynthetic disturbance in Zn-deficient tomato”

✓ located verbatim in the source · title, characters 0–135 · show in text ↑
e3

“Zn shortage caused a substantial reduction in Zn and Fe concentrations in both roots and shoots”

✓ located verbatim in the source · abstract, characters 553–648 · show in text ↑
e4

“accompanied by the downregulation of Fe-regulated transporter 1, Zn transporter-like (LOC100037509) , and Zn transporter (LOC101255999) genes predicted to be localized in the root plasma membrane”

✓ located after whitespace/quote normalisation · abstract, characters 697–893 · show in text ↑
Mechanismhypothesisoriginal resultbasis n/a

Claim · model-written summary

Zn homeostasis may be tightly linked to Fe status, together with a BHLH transcription factor, in Zn-deficient tomato.

Gene
BHLH transcription factore5
Outcome
Zn homeostasise5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Downregulation of Zn-transporters along with Fe and redox imbalance causes growth and photosynthetic disturbance in Zn-deficient tomato”

✓ located verbatim in the source · title, characters 0–135 · show in text ↑
e5

“suggesting that Zn homeostasis may be tightly linked to the Fe status along with BHLH transcription factor in Zn-deficient tomato”

✓ located verbatim in the source · abstract, characters 1101–1230 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Zn deficiency elevated O2.- and H2O2 levels in tomato.

Treatment
Zn deficiencye6
Outcome
O 2 .− and H 2 O 2e6
Direction
elevatede6

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Downregulation of Zn-transporters along with Fe and redox imbalance causes growth and photosynthetic disturbance in Zn-deficient tomato”

✓ located verbatim in the source · title, characters 0–135 · show in text ↑
e6

“We also noticed elevated O 2 .− and H 2 O 2 due to Zn deficiency which was consistent with the inefficient antioxidant properties”

✓ located verbatim in the source · abstract, characters 1232–1361 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The interactome partners of the Zn transporters were mainly root metal transporters, a ferric-chelate reductase, a BHLH regulator and Zn ion transporters.

Outcome
interactome partners of these Zn transporterse7
Qualifier
predominantly associated with root-specific metal transporter, ferric-chelate reductase, BHLH transcriptional regulator, and Zn metal ion transporterse7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

t0

“Downregulation of Zn-transporters along with Fe and redox imbalance causes growth and photosynthetic disturbance in Zn-deficient tomato”

✓ located verbatim in the source · title, characters 0–135 · show in text ↑
e7

“The interactome partners of these Zn transporters are predominantly associated with root-specific metal transporter, ferric-chelate reductase, BHLH transcriptional regulator, and Zn metal ion transporters”

✓ located verbatim in the source · abstract, characters 895–1099 · show in text ↑

zinc atom · molecular: expression · Solanum lycopersicum (tomato)Positive and negative results

2 papers: 1 positive, 1 negative or no effect

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  1. positive
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zinc atom · physiology: photosynthesis · Solanum lycopersicum (tomato)Positive and negative results

5 papers: 3 positive, 2 negative or no effect

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This paper is about lacking the nutrient, so it counts the other way round here.

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zinc atom · physiology: oxidative · Solanum lycopersicum (tomato)Positive and negative results

11 papers: 2 positive, 9 negative or no effect

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This paper is about lacking the nutrient, so it counts the other way round here.

  1. negative
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zinc atom · physiology: pigments · Solanum lycopersicum (tomato)Positive and negative results

18 papers: 6 positive, 12 negative or no effect

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This paper is about lacking the nutrient, so it counts the other way round here.

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zinc atom · nutrient: content · Solanum lycopersicum (tomato)Positive and negative results

22 papers: 15 positive, 7 negative or no effect

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.