Paper · 2021 · Scientific Reports

Molecular characterization of Fe-acquisition genes causing decreased Fe uptake and photosynthetic inefficiency in Fe-deficient sunflower

Ahmad Humayan Kabir; Sharaban Tahura; Mona M. Elseehy; et al.

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verbatim quotes
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citations
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Open access · cc-by

Abstract

Iron (Fe) deficiency in plants hinders growth and yield. Thus, this study aims to elucidate the responses and molecular characterization of genes in Fe-deficient sunflower. The study was conducted on 14 days-old sunflower plants cultivated in hydroponic culture under Fe-sufficient and Fe-deficient conditions. The Fe-starved sunflower showed substantial decrease in plant biomass, SPAD score, quantum yield efficiency of PSII (Fv/Fm), photosynthetic performance index (Pi_ABS). Further, Fe shortage reduced Fe and Zn concentrations in roots and shoots, accompanied by a marked decrease of HaNramp1 and HaZIP1 expression in roots, suggesting the association of Zn status contributing to photosynthetic inefficiency in sunflower. The ferric chelate reductase (FCR) activity, along with HaFRO2 and HaIRT1 transcripts, were constitutively expressed, suggesting that sunflower plants can regulate FCR activity, although the lack of bioavailable Fe in the rhizosphere strongly corresponds to the limited Fe uptake in sunflower. The substantial increase of proton extrusion in roots and the localization of Fe-related genes in the plasma membrane are also evident in sunflower as common responses to Fe-deficiency by this Strategy I plant species. Analysis showed that three motifs of Fe-related proteins were linked to the ZIP zinc transporter. The interactome map revealed the close partnership of these Fe-related genes in addition to FRU gene encoding putative transcription factor linked to Fe uptake response. The cis-regulatory analysis of promoter suggested the involvement of auxin, salicylic acid, and methyl jasmonate-responsive elements in the regulatory process in response to Fe deficiency. These findings may be beneficial to develop Fe-efficient sunflower plants through breeding or genome editing approaches.

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Claims 10

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Iron-starved sunflower showed decreased biomass, SPAD score and PSII efficiency.

Taxon
sunflowerHelianthus annuuse0
Treatment
Fe-starvede0
Outcome
plant biomass, SPAD score, quantum yield efficiency of PSII (Fv/Fm)e0
Direction
decreasee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Helianthus annuus
Helianthus annuus · TaxonJon Sullivan · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The Fe-starved sunflower showed substantial decrease in plant biomass, SPAD score, quantum yield efficiency of PSII (Fv/Fm), photosynthetic performance index (Pi_ABS).”

✓ located verbatim in the source · abstract, characters 311–478 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Iron-starved sunflower showed decreased photosynthetic performance index.

Taxon
sunflowerHelianthus annuuse0
Treatment
Fe-starvede0
Outcome
photosynthetic performance index (Pi_ABS)e0
Direction
decreasee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Helianthus annuus
Helianthus annuus · TaxonJon Sullivan · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The Fe-starved sunflower showed substantial decrease in plant biomass, SPAD score, quantum yield efficiency of PSII (Fv/Fm), photosynthetic performance index (Pi_ABS).”

✓ located verbatim in the source · abstract, characters 311–478 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Iron shortage reduced iron and zinc concentrations in sunflower roots and shoots.

Treatment
Fe shortagee0
Outcome
Fe and Zn concentrations in roots and shootse0
Direction
reducede0

Not reportedTaxonComparator

Verbatim

e0

“Fe shortage reduced Fe and Zn concentrations in roots and shoots”

✓ located verbatim in the source · abstract, characters 488–552 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Iron shortage decreased HaNramp1 and HaZIP1 expression in sunflower roots.

Gene
HaNramp1 and HaZIP1e0
Outcome
HaNramp1 and HaZIP1 expression in rootse0
Direction
decreasee0

Not reportedTaxonTreatmentComparator

Verbatim

e0

“a marked decrease of HaNramp1 and HaZIP1 expression in roots”

✓ located verbatim in the source · abstract, characters 569–629 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Ferric chelate reductase activity and HaFRO2 and HaIRT1 transcripts were constitutively expressed.

Gene
HaFRO2 and HaIRT1e0
Outcome
ferric chelate reductase (FCR) activity, along with HaFRO2 and HaIRT1 transcriptse0

Not reportedTaxon

Verbatim

e0

“The ferric chelate reductase (FCR) activity, along with HaFRO2 and HaIRT1 transcripts, were constitutively expressed”

✓ located verbatim in the source · abstract, characters 729–845 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Iron deficiency increased proton extrusion in sunflower roots.

Outcome
proton extrusion in rootse0
Direction
increasee0

Not reportedTaxonTreatmentComparator

Verbatim

e0

“The substantial increase of proton extrusion in roots”

✓ located verbatim in the source · abstract, characters 1023–1076 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Iron-related genes were localized in the plasma membrane.

Gene
Fe-related genese0
Outcome
localization of Fe-related genes in the plasma membranee0

Not reportedTaxon

Verbatim

e0

“the localization of Fe-related genes in the plasma membrane”

✓ located verbatim in the source · abstract, characters 1081–1140 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Three motifs of iron-related proteins were linked to the ZIP zinc transporter.

Gene
ZIP zinc transportere0
Outcome
three motifs of Fe-related proteinse0

Not reportedTaxonDirection

Verbatim

e0

“three motifs of Fe-related proteins were linked to the ZIP zinc transporter”

✓ located verbatim in the source · abstract, characters 1263–1338 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

The interactome map showed close partnership among iron-related genes and FRU.

Gene
FRU genee0
Outcome
close partnership of these Fe-related genese0

Not reportedTaxonDirection

Verbatim

e0

“The interactome map revealed the close partnership of these Fe-related genes in addition to FRU gene”

✓ located verbatim in the source · abstract, characters 1340–1440 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Promoter analysis suggested auxin, salicylic acid and methyl jasmonate response elements in iron-deficiency regulation.

Outcome
auxin, salicylic acid, and methyl jasmonate-responsive elementse0

Not reportedTaxon

Verbatim

e0

“The cis-regulatory analysis of promoter suggested the involvement of auxin, salicylic acid, and methyl jasmonate-responsive elements in the regulatory process in response to Fe deficiency”

✓ located verbatim in the source · abstract, characters 1510–1697 · show in text ↑

iron atom · nutrient: content · Helianthus annuus (common sunflower)Positive and negative results

10 papers: 8 positive, 2 negative or no effect

1 paper in the same direction as this paper · 8 in the opposite direction

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