Abstract
CS51 under heavy metal stress conditions (Zn, Cu, and Cd) and determine the genetic makeup of the CS51 genome using the single-molecule real-time (SMRT) sequencing technology of Pacific Biosciences. The results revealed that inoculation with CS51 induced endogenous indole-3-acetic acid (IAA) and gibberellins (GAs), which significantly enhanced cucumber growth (root shoot length) and increased the heavy metal tolerance of cucumber plants. Moreover, genomic analysis revealed that the CS51 genome consisted of a circular chromosome of 5,364,174 base pairs with an average G+C content of 64.71%. There were around 4774 predicted protein-coding sequences (CDSs) in 4859 genes, 15 rRNA genes, and 67 tRNA genes. Around 3950 protein-coding genes with function prediction and 733 genes without function prediction were identified. Furthermore, functional analyses predicted that the CS51 genome could encode genes required for auxin biosynthesis, nitrate and nitrite ammonification, the phosphate-specific transport system, and the sulfate transport system, which are beneficial for plant growth promotion. The heavy metal resistance of CS51 was confirmed by the presence of genes responsible for cobalt-zinc-cadmium resistance, nickel transport, and copper homeostasis in the CS51 genome. The extrapolation of the curve showed that the core genome contained a minimum of 2122 genes (95% confidence interval = 2034.24 to 2080.215). Our findings indicated that the genome sequence of CS51 may be used as an eco-friendly bioresource to promote plant growth in heavy metal-contaminated areas.
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Claims 15
Claim · model-written summary
Inoculation with CS51 increased endogenous indole-3-acetic acid and gibberellins in cucumber.
- Taxon
- cucumber
Cucumis sativuse1 - Treatment
- inoculation with CS51e1
- Interactor
- CS51e1symbiont
- Outcome
- endogenous indole-3-acetic acid (IAA) and gibberellins (GAs)e1
- Direction
- increaseinferrede1
Not reportedComparator
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“inoculation with CS51 induced endogenous indole-3-acetic acid (IAA) and gibberellins (GAs), which significantly enhanced cucumber growth (root shoot length) and increased the heavy metal tolerance of cucumber plants”
Claim · model-written summary
Inoculation with CS51 significantly increased cucumber growth (root shoot length).
- Taxon
- cucumberCucumis sativuse1
- Treatment
- inoculation with CS51e1
- Interactor
- CS51e1symbiont
- Outcome
- growth (root shoot length)e1
- Direction
- increaseinferrede1
Not reportedComparator
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“inoculation with CS51 induced endogenous indole-3-acetic acid (IAA) and gibberellins (GAs), which significantly enhanced cucumber growth (root shoot length) and increased the heavy metal tolerance of cucumber plants”
Claim · model-written summary
Inoculation with CS51 increased heavy metal tolerance of cucumber plants.
- Taxon
- cucumberCucumis sativuse1
- Treatment
- inoculation with CS51e1
- Interactor
- CS51e1symbiont
- Outcome
- heavy metal tolerancee1
- Direction
- increasede1
Not reportedComparator
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“inoculation with CS51 induced endogenous indole-3-acetic acid (IAA) and gibberellins (GAs), which significantly enhanced cucumber growth (root shoot length) and increased the heavy metal tolerance of cucumber plants”
Claim · model-written summary
The CS51 genome is a circular chromosome of 5,364,174 base pairs.
- Taxon
- cucumberCucumis sativuse1
- Material
- CS51e2
- Outcome
- circular chromosomee2
- Value
- 5,364,174 base pairse2
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“inoculation with CS51 induced endogenous indole-3-acetic acid (IAA) and gibberellins (GAs), which significantly enhanced cucumber growth (root shoot length) and increased the heavy metal tolerance of cucumber plants”
e2“Moreover, genomic analysis revealed that the CS51 genome consisted of a circular chromosome of 5,364,174 base pairs with an average G+C content of 64.71%”
Claim · model-written summary
The CS51 genome has an average G+C content of 64.71%.
- Taxon
- cucumberCucumis sativuse1
- Material
- CS51e2
- Outcome
- average G+C contente2
- Value
- 64.71%e2
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“inoculation with CS51 induced endogenous indole-3-acetic acid (IAA) and gibberellins (GAs), which significantly enhanced cucumber growth (root shoot length) and increased the heavy metal tolerance of cucumber plants”
e2“Moreover, genomic analysis revealed that the CS51 genome consisted of a circular chromosome of 5,364,174 base pairs with an average G+C content of 64.71%”
Claim · model-written summary
Around 4774 predicted protein-coding sequences were found in the CS51 genome.
- Taxon
- cucumberCucumis sativuse1
- Outcome
- predicted protein-coding sequences (CDSs)e3
- Value
- 4774e3
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“inoculation with CS51 induced endogenous indole-3-acetic acid (IAA) and gibberellins (GAs), which significantly enhanced cucumber growth (root shoot length) and increased the heavy metal tolerance of cucumber plants”
e3“There were around 4774 predicted protein-coding sequences (CDSs) in 4859 genes, 15 rRNA genes, and 67 tRNA genes”
Claim · model-written summary
Around 4859 genes were found in the CS51 genome.
- Taxon
- cucumberCucumis sativuse1
- Outcome
- genese3
- Value
- 4859e3
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“inoculation with CS51 induced endogenous indole-3-acetic acid (IAA) and gibberellins (GAs), which significantly enhanced cucumber growth (root shoot length) and increased the heavy metal tolerance of cucumber plants”
e3“There were around 4774 predicted protein-coding sequences (CDSs) in 4859 genes, 15 rRNA genes, and 67 tRNA genes”
Claim · model-written summary
Fifteen rRNA genes were found in the CS51 genome.
- Taxon
- cucumberCucumis sativuse1
- Outcome
- rRNA genese3
- Value
- 15e3
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“inoculation with CS51 induced endogenous indole-3-acetic acid (IAA) and gibberellins (GAs), which significantly enhanced cucumber growth (root shoot length) and increased the heavy metal tolerance of cucumber plants”
e3“There were around 4774 predicted protein-coding sequences (CDSs) in 4859 genes, 15 rRNA genes, and 67 tRNA genes”
Claim · model-written summary
Sixty-seven tRNA genes were found in the CS51 genome.
- Taxon
- cucumberCucumis sativuse1
- Outcome
- tRNA genese3
- Value
- 67e3
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“inoculation with CS51 induced endogenous indole-3-acetic acid (IAA) and gibberellins (GAs), which significantly enhanced cucumber growth (root shoot length) and increased the heavy metal tolerance of cucumber plants”
e3“There were around 4774 predicted protein-coding sequences (CDSs) in 4859 genes, 15 rRNA genes, and 67 tRNA genes”
Claim · model-written summary
Around 3950 protein-coding genes had function prediction in the CS51 genome.
- Taxon
- cucumberCucumis sativuse1
- Outcome
- protein-coding genes with function predictione4
- Value
- 3950e4
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“inoculation with CS51 induced endogenous indole-3-acetic acid (IAA) and gibberellins (GAs), which significantly enhanced cucumber growth (root shoot length) and increased the heavy metal tolerance of cucumber plants”
e4“Around 3950 protein-coding genes with function prediction and 733 genes without function prediction were identified”
Claim · model-written summary
733 genes in the CS51 genome had no function prediction.
- Taxon
- cucumberCucumis sativuse1
- Outcome
- genes without function predictione4
- Value
- 733e4
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“inoculation with CS51 induced endogenous indole-3-acetic acid (IAA) and gibberellins (GAs), which significantly enhanced cucumber growth (root shoot length) and increased the heavy metal tolerance of cucumber plants”
e4“Around 3950 protein-coding genes with function prediction and 733 genes without function prediction were identified”
Claim · model-written summary
The CS51 genome is predicted to encode genes for auxin biosynthesis, nitrate and nitrite ammonification, and phosphate-specific transport.
- Taxon
- cucumberCucumis sativuse1
- Material
- CS51e5
- Outcome
- genes required for auxin biosynthesis, nitrate and nitrite ammonification, the phosphate-specific transport systeme5
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“inoculation with CS51 induced endogenous indole-3-acetic acid (IAA) and gibberellins (GAs), which significantly enhanced cucumber growth (root shoot length) and increased the heavy metal tolerance of cucumber plants”
e5“functional analyses predicted that the CS51 genome could encode genes required for auxin biosynthesis, nitrate and nitrite ammonification, the phosphate-specific transport system, and the sulfate transport system, which are beneficial for plant growth promotion”
Claim · model-written summary
The CS51 genome is predicted to encode genes for the sulfate transport system.
- Taxon
- cucumberCucumis sativuse1
- Material
- CS51e5
- Outcome
- the sulfate transport systeme5
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“inoculation with CS51 induced endogenous indole-3-acetic acid (IAA) and gibberellins (GAs), which significantly enhanced cucumber growth (root shoot length) and increased the heavy metal tolerance of cucumber plants”
e5“functional analyses predicted that the CS51 genome could encode genes required for auxin biosynthesis, nitrate and nitrite ammonification, the phosphate-specific transport system, and the sulfate transport system, which are beneficial for plant growth promotion”
Claim · model-written summary
The CS51 genome carries genes for cobalt-zinc-cadmium resistance, nickel transport and copper homeostasis.
- Taxon
- cucumberCucumis sativuse1
- Material
- CS51e6
- Outcome
- genes responsible for cobalt-zinc-cadmium resistance, nickel transport, and copper homeostasise6
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“inoculation with CS51 induced endogenous indole-3-acetic acid (IAA) and gibberellins (GAs), which significantly enhanced cucumber growth (root shoot length) and increased the heavy metal tolerance of cucumber plants”
e6“The heavy metal resistance of CS51 was confirmed by the presence of genes responsible for cobalt-zinc-cadmium resistance, nickel transport, and copper homeostasis in the CS51 genome”
Claim · model-written summary
The core genome of CS51 contained a minimum of 2122 genes, from an extrapolated curve.
- Taxon
- cucumberCucumis sativuse1
- Outcome
- core genomee7
- Value
- 2122 genese7
- Qualifier
- 95% confidence interval = 2034.24 to 2080.215e7
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e1“inoculation with CS51 induced endogenous indole-3-acetic acid (IAA) and gibberellins (GAs), which significantly enhanced cucumber growth (root shoot length) and increased the heavy metal tolerance of cucumber plants”
e7“The extrapolation of the curve showed that the core genome contained a minimum of 2122 genes (95% confidence interval = 2034.24 to 2080.215)”
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See all 9 papers →Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.