Paper · 2019 · Journal of Experimental Botany

Linkage mapping and genome-wide association reveal candidate genes conferring thermotolerance of seed-set in maize

Jingyang Gao; Songfeng Wang; Zijian Zhou; et al.

6
claims
10
verbatim quotes
59
citations
4
research areas
—
Not open access

Abstract

It is predicted that high-temperature stress will increasingly affect crop yields worldwide as a result of climate change. In order to determine the genetic basis of thermotolerance of seed-set in maize under field conditions, we performed mapping of quantitative trait loci (QTLs) in a recombinant inbred line (RIL) population using a collection of 8329 specifically developed high-density single-nucleotide polymorphism (SNP) markers, combined with a genome-wide association study (GWAS) of 261 diverse maize lines using 259 973 SNPs. In total, four QTLs and 17 genes associated with 42 SNPs related to thermotolerance of seed-set were identified. Among them, four candidate genes were found in both linkage mapping and GWAS. Thermotolerance of seed-set was increased significantly in near-isogenic lines (NILs) that incorporated the four candidate genes in a susceptible parent background. The expression profiles of two of the four genes showed that they were induced by high temperatures in the maize tassel in a tolerant parent background. Our results indicate that thermotolerance of maize seed-set is regulated by multiple genes each of which has minor effects, with calcium signaling playing a central role. The genes identified may be exploited in breeding programs to improve seed-set and yield of maize under heat stress.

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Claims 6

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Linkage mapping and GWAS identified four QTLs and 17 genes associated with 42 SNPs for maize seed-set thermotolerance.

Taxon
maizeZea mayst0
Outcome
thermotolerance of seed-sete0
Value
four QTLs and 17 genes associated with 42 SNPse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“In total, four QTLs and 17 genes associated with 42 SNPs related to thermotolerance of seed-set were identified.”

✓ located verbatim in the source · abstract, characters 537–649 · show in text ↑
t0

“maize”

✓ located verbatim in the source · title, characters 109–114 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Four candidate genes for maize seed-set thermotolerance were found in both linkage mapping and GWAS.

Taxon
maizeZea mayst0
Outcome
candidate genese0
Value
four candidate genese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Among them, four candidate genes were found in both linkage mapping and GWAS.”

✓ located verbatim in the source · abstract, characters 650–727 · show in text ↑
t0

“maize”

✓ located verbatim in the source · title, characters 109–114 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Near-isogenic maize lines carrying the four candidate genes had significantly increased seed-set thermotolerance in a susceptible parent background.

Taxon
maizeZea mayst0
Material
near-isogenic lines (NILs)e0
Treatment
incorporated the four candidate genese0
Outcome
Thermotolerance of seed-sete0
Direction
increasede0
Comparator
susceptible parent backgrounde0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Thermotolerance of seed-set was increased significantly in near-isogenic lines (NILs) that incorporated the four candidate genes in a susceptible parent background.”

✓ located verbatim in the source · abstract, characters 728–892 · show in text ↑
t0

“maize”

✓ located verbatim in the source · title, characters 109–114 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

High temperatures induced expression of two candidate genes in tassels of a tolerant maize parent.

Taxon
maizeZea mayse0
Material
tolerant parent backgrounde0
Organ / stage
maize tassele0
Treatment
high temperaturese0
Gene
two of the four genese0
Outcome
expression profilese0
Direction
inducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“The expression profiles of two of the four genes showed that they were induced by high temperatures in the maize tassel in a tolerant parent background.”

✓ located verbatim in the source · abstract, characters 893–1045 · show in text ↑
t0

“maize”

✓ located verbatim in the source · title, characters 109–114 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors infer that several minor-effect genes regulate maize seed-set thermotolerance, with calcium signaling central.

Taxon
maizeZea mayse0
Gene
multiple genese0
Outcome
thermotolerance of maize seed-sete0
Qualifier
calcium signaling playing a central rolee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Our results indicate that thermotolerance of maize seed-set is regulated by multiple genes each of which has minor effects, with calcium signaling playing a central role.”

✓ located verbatim in the source · abstract, characters 1046–1216 · show in text ↑
Recommendationauthor interpretationoriginal resultpositivebasis n/a

Claim · model-written summary

The authors propose using the identified genes to improve maize seed-set and yield under heat stress.

Taxon
maizeZea mayse0
Outcome
improve seed-set and yielde0
Qualifier
under heat stresse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“The genes identified may be exploited in breeding programs to improve seed-set and yield of maize under heat stress.”

✓ located verbatim in the source · abstract, characters 1217–1333 · show in text ↑

heat · molecular: expression · Zea mays (maize)Positive and negative results

20 papers: 10 positive, 10 negative or no effect

9 papers in the same direction as this paper · 10 in the opposite direction

  1. negative
  2. no effect
  3. negative

16 papers more in this group

See all 20 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.