Paper · 2016 · Genetics and Molecular Research

Clustering of soybean genotypes via Ward-MLM and ANNs associated with mixed models

P.E. Teodoro; F.E. Torres; A.M. Corrêa

6
claims
13
verbatim quotes
2
citations
2
research areas
✓
Open access

Abstract

The objectives of this study were to use mixed models to confirm the presence of genetic variability in 16 soybean genotypes, to compare clusters generated by artificial neural networks (ANNs) with those created by the Ward modified location model (MLM) technique, and to indicate parental combinations that hold promise for obtaining superior segregating populations of soybean. A field trial was conducted between November 2014 and February 2015 at Universidade Estadual de Mato Grosso do Sul, Aquidauana, MS. The experimental design consisted of four replications of randomized blocks, each containing 16 treatments. We assessed the following agronomic traits: plant height, first pod height, number of branches per plant, number of pods per plant, number of grains per pod, hundred-grain weight, and grain yield. Mixed models were used to estimate variance components and genetic parameters, and obtain genotypic values for each trait. After verifying the presence of genetic variability for all traits, genotypic values were submitted to both a Ward-MLM procedure and ANNs to estimate genetic divergence among genotypes. The number of groups formed by both methods was the same, but there were differences in group constitutions. ANN analysis improved soybean genotypes clustering patterns compared to Ward-MLM procedure. Based on these methods, divergent crosses may be made between genotype 97R73 with genotypes AS3797 and SYN9070, whereas convergent crosses may be made between genotypes AS3797 and SYN9070.

Abstract from the paper’s OpenAlex record, shown for indexing and research. Copyright remains with the authors or the publisher. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 6

Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

ANN clustering improved soybean genotype clustering patterns compared with the Ward-MLM procedure.

Taxon
soybeanGlycine maxe4
Outcome
clustering patternse4
Direction
improvede4
Comparator
Ward-MLM proceduree4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e4

“ANN analysis improved soybean genotypes clustering patterns compared to Ward-MLM procedure”

✓ located verbatim in the source · abstract, characters 1235–1325 · show in text ↑
Method / resourceobservedoriginal resultno effectmeasured

Claim · model-written summary

ANN and Ward-MLM formed the same number of groups.

Taxon
soybeanGlycine maxt0
Outcome
number of groupse3
Direction
samee3
Comparator
Ward-MLM proceduree4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Clustering of soybean genotypes via Ward-MLM and ANNs associated with mixed models”

✓ located verbatim in the source · title, characters 0–82 · show in text ↑
e3

“The number of groups formed by both methods was the same, but there were differences in group constitutions”

✓ located verbatim in the source · abstract, characters 1126–1233 · show in text ↑
e4

“ANN analysis improved soybean genotypes clustering patterns compared to Ward-MLM procedure”

✓ located verbatim in the source · abstract, characters 1235–1325 · show in text ↑
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

ANN and Ward-MLM clustering differed in group constitutions.

Taxon
soybeanGlycine maxt0
Outcome
group constitutionse3
Direction
differencese3
Comparator
Ward-MLM proceduree4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Clustering of soybean genotypes via Ward-MLM and ANNs associated with mixed models”

✓ located verbatim in the source · title, characters 0–82 · show in text ↑
e3

“The number of groups formed by both methods was the same, but there were differences in group constitutions”

✓ located verbatim in the source · abstract, characters 1126–1233 · show in text ↑
e4

“ANN analysis improved soybean genotypes clustering patterns compared to Ward-MLM procedure”

✓ located verbatim in the source · abstract, characters 1235–1325 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Genetic variability was verified for all traits in 16 soybean genotypes.

Taxon
soybeanGlycine maxe1
Material
16 soybean genotypese1
Outcome
presence of genetic variabilitye2
Qualifier
for all traitse2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e1

“to confirm the presence of genetic variability in 16 soybean genotypes”

✓ located verbatim in the source · abstract, characters 54–124 · show in text ↑
e2

“After verifying the presence of genetic variability for all traits”

✓ located verbatim in the source · abstract, characters 940–1006 · show in text ↑
Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

Divergent crosses may be made between genotype 97R73 and genotypes AS3797 and SYN9070.

Taxon
soybeanGlycine maxt0
Material
97R73e5
Outcome
divergent crossese5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Clustering of soybean genotypes via Ward-MLM and ANNs associated with mixed models”

✓ located verbatim in the source · title, characters 0–82 · show in text ↑
e5

“divergent crosses may be made between genotype 97R73 with genotypes AS3797 and SYN9070”

✓ located verbatim in the source · abstract, characters 1351–1437 · show in text ↑
Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

Convergent crosses may be made between genotypes AS3797 and SYN9070.

Taxon
soybeanGlycine maxt0
Material
AS3797 and SYN9070e6
Outcome
convergent crossese6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

t0

“Clustering of soybean genotypes via Ward-MLM and ANNs associated with mixed models”

✓ located verbatim in the source · title, characters 0–82 · show in text ↑
e6

“convergent crosses may be made between genotypes AS3797 and SYN9070”

✓ located verbatim in the source · abstract, characters 1447–1514 · show in text ↑