Paper · 2015 · Scientific Reports

Nodulation Characterization and Proteomic Profiling of Bradyrhizobium liaoningense CCBAU05525 in Response to Water-Soluble Humic Materials

Tong Guo Gao; Yuan Yuan Xu; Feng Jiang; et al.

8
claims
20
verbatim quotes
51
citations
3
research areas
✓
Open access · cc-by

Abstract

The lignite biodegradation procedure to produce water-soluble humic materials (WSHM) with a Penicillium stain was established by previous studies in our laboratory. This study researched the effects of WSHM on the growth of Bradyrhizobium liaoningense CCBAU05525 and its nodulation on soybean. Results showed that WSHM enhanced the cell density of CCBAU05525 in culture, and increased the nodule number, nodule fresh weight and nitrogenase activity of the inoculated soybean plants. Then the chemical compounds of WSHM were analyzed and flavonoid analogues were identified in WSHM through tetramethyl ammonium hydroxide (TMAH)-py-GC/MS analysis. Protein expression profiles and nod gene expression of CCBAU05525 in response to WSHM or genistein were compared to illustrate the working mechanism of WSHM. The differently expressed proteins in response to WSHM were involved in nitrogen and carbon metabolism, nucleic acid metabolism, signaling, energy production and some transmembrane transports. WSHM was found more effective than genistein in inducing the nod gene expression. These results demonstrated that WSHM stimulated cell metabolism and nutrient transport, which resulted in increased cell density of CCBAU05525 and prepared the bacteria for better bacteroid development. Furthermore, WSHM had similar but superior functions to flavone in inducing nod gene and nitrogen fixation related proteins expression in CCBAU05525.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 8

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

WSHM enhanced Bradyrhizobium cell density in culture.

Taxon
soybeanGlycine maxt0
Treatment
WSHMe0
Interactor
CCBAU05525e0symbiont
Outcome
cell density of CCBAU05525e0
Direction
enhancede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“WSHM enhanced the cell density of CCBAU05525 in culture”

✓ located verbatim in the source · abstract, characters 314–369 · show in text ↑
t0

“its nodulation on soybean.”

✓ located verbatim in the source · abstract, characters 267–293 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

WSHM increased nodule number and fresh weight in inoculated soybean.

Taxon
soybeanGlycine maxe0
Treatment
WSHMt0
Interactor
CCBAU05525t1symbiont
Outcome
nodule number, nodule fresh weighte0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“increased the nodule number, nodule fresh weight and nitrogenase activity of the inoculated soybean plants”

✓ located verbatim in the source · abstract, characters 375–481 · show in text ↑
t0

“Results showed that WSHM”

✓ located verbatim in the source · abstract, characters 294–318 · show in text ↑
t1

“Bradyrhizobium liaoningense CCBAU05525”

✓ located verbatim in the source · abstract, characters 224–262 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

WSHM increased nitrogenase activity in inoculated soybean.

Taxon
soybeanGlycine maxe0
Treatment
WSHMt0
Interactor
CCBAU05525t1symbiont
Gene
nitrogenasee0
Outcome
nitrogenase activitye0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“increased the nodule number, nodule fresh weight and nitrogenase activity of the inoculated soybean plants”

✓ located verbatim in the source · abstract, characters 375–481 · show in text ↑
t0

“Results showed that WSHM”

✓ located verbatim in the source · abstract, characters 294–318 · show in text ↑
t1

“Bradyrhizobium liaoningense CCBAU05525”

✓ located verbatim in the source · abstract, characters 224–262 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Flavonoid analogues were identified in WSHM.

Taxon
soybeanGlycine maxt0
Treatment
WSHMe0
Outcome
flavonoid analoguese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“flavonoid analogues were identified in WSHM”

✓ located verbatim in the source · abstract, characters 537–580 · show in text ↑
t0

“its nodulation on soybean.”

✓ located verbatim in the source · abstract, characters 267–293 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

WSHM changed rhizobial proteins involved in metabolism, signaling, energy production and transport.

Taxon
soybeanGlycine maxt0
Treatment
WSHMe0
Interactor
CCBAU05525t1symbiont
Outcome
differently expressed proteinse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“differently expressed proteins in response to WSHM were involved in nitrogen and carbon metabolism, nucleic acid metabolism, signaling, energy production and some transmembrane transports”

✓ located verbatim in the source · abstract, characters 808–995 · show in text ↑
t0

“its nodulation on soybean.”

✓ located verbatim in the source · abstract, characters 267–293 · show in text ↑
t1

“Bradyrhizobium liaoningense CCBAU05525”

✓ located verbatim in the source · abstract, characters 224–262 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

WSHM induced nod gene expression more effectively than genistein.

Taxon
soybeanGlycine maxt0
Treatment
WSHMe0
Interactor
CCBAU05525t1symbiont
Gene
nod genee0
Outcome
nod gene expressione0
Direction
more effectivee0
Comparator
genisteine0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“WSHM was found more effective than genistein in inducing the nod gene expression”

✓ located verbatim in the source · abstract, characters 997–1077 · show in text ↑
t0

“its nodulation on soybean.”

✓ located verbatim in the source · abstract, characters 267–293 · show in text ↑
t1

“Bradyrhizobium liaoningense CCBAU05525”

✓ located verbatim in the source · abstract, characters 224–262 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

WSHM stimulated rhizobial metabolism and nutrient transport, increasing cell density and preparing bacteroid development.

Taxon
soybeanGlycine maxt0
Treatment
WSHMe0
Interactor
CCBAU05525e0symbiont
Outcome
increased cell density of CCBAU05525e0
Qualifier
stimulated cell metabolism and nutrient transporte0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“WSHM stimulated cell metabolism and nutrient transport, which resulted in increased cell density of CCBAU05525 and prepared the bacteria for better bacteroid development”

✓ located verbatim in the source · abstract, characters 1111–1280 · show in text ↑
t0

“its nodulation on soybean.”

✓ located verbatim in the source · abstract, characters 267–293 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

WSHM was superior to flavone for inducing nod gene and nitrogen fixation protein expression.

Taxon
soybeanGlycine maxt0
Treatment
WSHMe0
Interactor
CCBAU05525e0symbiont
Outcome
nod gene and nitrogen fixation related proteins expression in CCBAU05525e0
Direction
superiore0
Comparator
flavonee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“WSHM had similar but superior functions to flavone in inducing nod gene and nitrogen fixation related proteins expression in CCBAU05525”

✓ located verbatim in the source · abstract, characters 1295–1430 · show in text ↑
t0

“its nodulation on soybean.”

✓ located verbatim in the source · abstract, characters 267–293 · show in text ↑

other · symbiosis · Glycine max (soybean)Positive and negative results

16 papers: 14 positive, 2 negative or no effect

13 papers in the same direction as this paper · 2 in the opposite direction

  1. positive
  2. positive
  3. positive

12 papers more in this group

See all 16 papers →

other · molecular: expression · Glycine max (soybean)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

other · physiology: enzyme activity · Glycine max (soybean)Results agree

8 papers: 8 positive, 0 negative or no effect

7 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

4 papers more in this group

See all 8 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.