Paper · 2008 · Applied and Environmental Microbiology

Genome Survey and Characterization of Endophytic Bacteria Exhibiting a Beneficial Effect on Growth and Development of Poplar Trees

Safiyh Taghavi; Craig Garafola; Sébastien Monchy; et al.

3
claims
3
verbatim quotes
619
citations
2
research areas
✓
Open access

Abstract

The association of endophytic bacteria with their plant hosts has a beneficial effect for many different plant species. Our goal is to identify endophytic bacteria that improve the biomass production and the carbon sequestration potential of poplar trees (Populus spp.) when grown in marginal soil and to gain an insight in the mechanisms underlying plant growth promotion. Members of the Gammaproteobacteria dominated a collection of 78 bacterial endophytes isolated from poplar and willow trees. As representatives for the dominant genera of endophytic gammaproteobacteria, we selected Enterobacter sp. strain 638, Stenotrophomonas maltophilia R551-3, Pseudomonas putida W619, and Serratia proteamaculans 568 for genome sequencing and analysis of their plant growth-promoting effects, including root development. Derivatives of these endophytes, labeled with gfp, were also used to study the colonization of their poplar hosts. In greenhouse studies, poplar cuttings (Populus deltoides x Populus nigra DN-34) inoculated with Enterobacter sp. strain 638 repeatedly showed the highest increase in biomass production compared to cuttings of noninoculated control plants. Sequence data combined with the analysis of their metabolic properties resulted in the identification of many putative mechanisms, including carbon source utilization, that help these endophytes to thrive within a plant environment and to potentially affect the growth and development of their plant hosts. Understanding the interactions between endophytic bacteria and their host plants should ultimately result in the design of strategies for improved poplar biomass production on marginal soils as a feedstock for biofuels.

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Claims 3

Observationobservedoriginal resultmeasured

Claim · model-written summary

Gammaproteobacteria dominated 78 endophytes isolated from poplar and willow trees.

Taxon
poplarPopuluse0
Interactor
GammaproteobacteriaGammaproteobacteriae0symbiont
Outcome
dominated a collection of 78 bacterial endophytese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Populus
Populus · Taxon · picture of the genus (one of its species)Christian Fischer · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Members of the Gammaproteobacteria dominated a collection of 78 bacterial endophytes isolated from poplar and willow trees”

✓ located verbatim in the source · abstract, characters 374–496 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Enterobacter sp. strain 638 inoculation gave poplar cuttings the greatest biomass increase against uninoculated controls.

Taxon
poplarPopuluse0
Material
Populus deltoides x Populus nigra DN-34e0
Treatment
inoculated with Enterobacter sp. strain 638e0
Interactor
Enterobacter sp. strain 638Enterobacter sp.e0symbiont
Outcome
biomass productione0
Direction
highest increasee0
Comparator
noninoculated control plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Populus
Populus · Taxon · picture of the genus (one of its species)Christian Fischer · CC BY-SA 3.0 · Wikimedia Commons ↗
Enterobacter sp.
Enterobacter sp. · Interactor · picture of its genus (no picture of exactly this name)Public domain · Wikimedia Commons ↗

Verbatim

e0

“poplar cuttings (Populus deltoides x Populus nigra DN-34) inoculated with Enterobacter sp. strain 638 repeatedly showed the highest increase in biomass production compared to cuttings of noninoculated control plants”

✓ located verbatim in the source · abstract, characters 953–1168 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Sequence and metabolic analyses identified putative endophyte traits associated with thriving in plants and potentially influencing host growth.

Outcome
identification of many putative mechanismse0
Qualifier
including carbon source utilizatione0

Not reportedTaxon

Verbatim

e0

“Sequence data combined with the analysis of their metabolic properties resulted in the identification of many putative mechanisms, including carbon source utilization, that help these endophytes to thrive within a plant environment and to potentially affect the growth and development of their plant hosts”

✓ located verbatim in the source · abstract, characters 1170–1475 · show in text ↑

inoculation · yield · Populus (poplar)Results agree

4 papers: 4 positive, 0 negative or no effect

3 papers in the same direction as this paper

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.