Paper · 2008 · New Phytologist

Functional analysis of the heavy metal binding domains of the Zn/Cd‐transporting ATPase, HMA2, in Arabidopsis thaliana

Chong Kum Edwin Wong; Renée S. Jarvis; Sarah M. Sherson; et al.

8
claims
17
verbatim quotes
113
citations
3
research areas
✓
Open access · other-oa

Abstract

The Zn/Cd-transporting ATPase, HMA2, has N- and C-terminal domains that can bind Zn ions with high affinity. Mutant derivatives were generated to determine the significance of these domains to HMA2 function in planta. Mutant derivatives, with and without a C-terminal GFP tag, were expressed from the HMA2 promoter in transgenic hma2,hma4, Zn-deficient, plants to test for functionality. A deletion mutant lacking the C-terminal 244 amino acids rescued most of the hma2,hma4 Zn-deficiency phenotypes with the exception of embryo or seed development. Root-to-shoot Cd translocation was fully rescued. The GFP-tagged derivative was partially mis-localized in the root pericycle cells in which it was expressed. Deletion derivatives lacking the C-terminal 121 and 21 amino acids rescued all phenotypes and localized normally. N-terminal domain mutants localized normally but failed to complement the hma2,hma4 phenotypes. These observations suggest that the N-terminal domain of HMA2 is essential for function in planta while the C-terminal domain, although not essential for function, may contain a signal important for the subcellular localization of the protein.

Abstract from the paper’s OpenAlex record; open copy licensed other-oa. Read at the source ↗

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Claims 8

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

A deletion lacking the C-terminal 244 amino acids of HMA2 rescued most Zn-deficiency phenotypes of hma2,hma4 plants

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Treatment
deletion mutant lacking the C-terminal 244 amino acidse0
Gene
hma2,hma4e0
Outcome
Zn-deficiency phenotypese0
Direction
rescued moste0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“in Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 95–118 · show in text ↑
e0

“A deletion mutant lacking the C-terminal 244 amino acids rescued most of the hma2,hma4 Zn-deficiency phenotypes with the exception of embryo or seed development”

✓ located verbatim in the source · abstract, characters 388–548 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

The 244-amino-acid C-terminal deletion did not rescue embryo or seed development

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Treatment
deletion mutant lacking the C-terminal 244 amino acidse0
Gene
hma2,hma4e0
Outcome
embryo or seed developmente0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“in Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 95–118 · show in text ↑
e0

“A deletion mutant lacking the C-terminal 244 amino acids rescued most of the hma2,hma4 Zn-deficiency phenotypes with the exception of embryo or seed development”

✓ located verbatim in the source · abstract, characters 388–548 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Root-to-shoot Cd translocation was fully rescued by the C-terminal 244-amino-acid deletion

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Treatment
deletion mutant lacking the C-terminal 244 amino acidse0
Outcome
Root-to-shoot Cd translocatione1
Direction
fully rescuede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“in Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 95–118 · show in text ↑
e0

“A deletion mutant lacking the C-terminal 244 amino acids rescued most of the hma2,hma4 Zn-deficiency phenotypes”

✓ located verbatim in the source · abstract, characters 388–499 · show in text ↑
e1

“Root-to-shoot Cd translocation was fully rescued”

✓ located verbatim in the source · abstract, characters 550–598 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

The GFP-tagged HMA2 derivative was partially mis-localized in root pericycle cells

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Organ / stage
root pericycle cellse2
Treatment
GFP-tagged derivativee2
Outcome
mis-localizede2
Direction
partiallye2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“in Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 95–118 · show in text ↑
e2

“The GFP-tagged derivative was partially mis-localized in the root pericycle cells in which it was expressed”

✓ located verbatim in the source · abstract, characters 600–707 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Deletions lacking the C-terminal 121 and 21 amino acids rescued all phenotypes and localized normally

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Treatment
Deletion derivatives lacking the C-terminal 121 and 21 amino acidse3
Outcome
phenotypese3
Direction
rescued alle3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“in Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 95–118 · show in text ↑
e3

“Deletion derivatives lacking the C-terminal 121 and 21 amino acids rescued all phenotypes and localized normally”

✓ located verbatim in the source · abstract, characters 709–821 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

N-terminal domain mutants localized normally

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Treatment
N-terminal domain mutantse4
Outcome
localized normallye4

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“in Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 95–118 · show in text ↑
e4

“N-terminal domain mutants localized normally but failed to complement the hma2,hma4 phenotypes”

✓ located verbatim in the source · abstract, characters 823–917 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

N-terminal domain mutants failed to complement the hma2,hma4 phenotypes

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Treatment
N-terminal domain mutantse4
Outcome
hma2,hma4 phenotypese4
Direction
failed to complemente4

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“in Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 95–118 · show in text ↑
e4

“N-terminal domain mutants localized normally but failed to complement the hma2,hma4 phenotypes”

✓ located verbatim in the source · abstract, characters 823–917 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The N-terminal domain of HMA2 is essential for function in planta

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Gene
HMA2e5
Outcome
function in plantae5
Qualifier
essentiale5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“in Arabidopsis thaliana”

✓ located verbatim in the source · title, characters 95–118 · show in text ↑
e5

“the N-terminal domain of HMA2 is essential for function in planta”

✓ located verbatim in the source · abstract, characters 951–1016 · show in text ↑

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131 papers: 38 positive, 93 negative or no effect

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.