Paper · 2015 · PLoS ONE

Molecular Identification and Functional Characterization of the Fatty Acid- and Retinoid-Binding Protein Gene Rs-far-1 in the Burrowing Nematode Radopholus similis (Tylenchida: Pratylenchidae)

Chao Zhang; Hui Xie; Xi Cheng; et al.

4
claims
7
verbatim quotes
31
citations
2
research areas
✓
Open access · cc-by

Abstract

Fatty acid- and retinoid-binding protein (FAR) is a nematode-specific protein expressed in the nematode hypodermis. It is involved in nematode development, reproduction, and infection and can disrupt the plant defense reaction. In this study, we obtained the full-length sequence of the far gene from Radopholus similis (Rs-far-1), which is 828 bp long and includes a 558 bp ORF encoding 186 amino acids. A protein homology analysis revealed that Rs-FAR-1 is 75% similar to Mj-FAR-1 from Meloidogyne javanica. A neighbor-joining phylogenetic tree was inferred and showed that Rs-FAR-1 is most similar to Pv-FAR-1 from Pratylenchus vulnus. A fluorescence-based ligand-binding analysis confirmed that Rs-FAR-1 can combine with fatty acids and retinol. qPCR was used to assess Rs-far-1 expression levels at different developmental stages in different R. similis populations, and its expression was 2.5 times greater in the highly pathogenic Rs-C population than in the less pathogenic Rs-P population. The highest expression was found in females, followed by eggs, juveniles and males. When R. similis was treated with Rs-far-1 dsRNA for 36 h, the reproduction and pathogenicity decreased significantly. In situ hybridization revealed Rs-far-1 transcripts in the R. similis hypodermis. Additionally, R. similis treated with Rs-far-1 dsRNA or water were inoculated into Arabidopsis thaliana. Allene oxide synthase (AOS) expression in A. thaliana was upregulated during early infection in both treatments and then returned to the expression levels of the control plant. Compared with the control plant, AOS expression significantly decreased in A. thaliana inoculated with water-treated R. similis but significantly increased in A. thaliana inoculated with Rs-far-1 dsRNA-treated R. similis. This finding indicates that Rs-far-1 regulates AOS expression in A. thaliana. Rs-FAR-1 plays a critical role in R. similis development, reproduction, and infection and can disturb the plant defense reaction. Therefore, Rs-far-1 is an important target gene to control R. similis.

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Claims 4

Observationobservedoriginal resultmeasured

Claim · model-written summary

Arabidopsis AOS expression rose during early infection under both nematode treatments.

Taxon
A. thalianaArabidopsis thalianae0
Organ / stage
early infectione0
Gene
Allene oxide synthase (AOS)e0
Outcome
expressione0
Direction
upregulatede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Allene oxide synthase (AOS) expression in A. thaliana was upregulated during early infection in both treatments”

✓ located verbatim in the source · abstract, characters 1388–1499 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Arabidopsis AOS expression later returned to control-plant levels.

Taxon
Arabidopsis thalianaArabidopsis thalianat0
Gene
AOSe1
Outcome
expression levelse0
Direction
returnede0
Comparator
control plante0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“then returned to the expression levels of the control plant.”

✓ located verbatim in the source · abstract, characters 1504–1564 · show in text ↑
e1

“Allene oxide synthase (AOS) expression in A. thaliana”

✓ located verbatim in the source · abstract, characters 1388–1441 · show in text ↑
t0

“Arabidopsis thaliana”

✓ located verbatim in the source · abstract, characters 1366–1386 · show in text ↑
Intervention effectobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

Water-treated nematodes significantly decreased Arabidopsis AOS expression relative to controls.

Taxon
A. thalianaArabidopsis thalianae0
Treatment
inoculated with water-treated R. similise0
Interactor
R. similisRadopholus similise0pathogen
Gene
AOSe0
Outcome
AOS expressione0
Direction
decreasede0
Comparator
control plante0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗
Radopholus similis
Radopholus similis · InteractorFlorida Division of Plant Industry Archive, Florida Department of Agriculture and Consumer Services, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Compared with the control plant, AOS expression significantly decreased in A. thaliana inoculated with water-treated R. similis”

✓ located verbatim in the source · abstract, characters 1565–1692 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors infer that nematode Rs-far-1 regulates Arabidopsis AOS expression.

Taxon
A. thalianaArabidopsis thalianae0
Interactor
R. similisRadopholus similise1pathogen
Gene
Rs-far-1e0
Outcome
AOS expressione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗
Radopholus similis
Radopholus similis · InteractorFlorida Division of Plant Industry Archive, Florida Department of Agriculture and Consumer Services, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“This finding indicates that Rs-far-1 regulates AOS expression in A. thaliana.”

✓ located verbatim in the source · abstract, characters 1787–1864 · show in text ↑
e1

“R. similis treated with Rs-far-1 dsRNA or water were inoculated into Arabidopsis thaliana.”

✓ located verbatim in the source · abstract, characters 1297–1387 · show in text ↑

inoculation · molecular: expression · Arabidopsis thaliana (thale cress)Positive and negative results

18 papers: 15 positive, 3 negative or no effect

2 papers in the same direction as this paper · 15 in the opposite direction

  1. positive
  2. positive
  3. positive

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.