Paper · 2009 · Molecular Plant-Microbe Interactions

A Comprehensive Transcriptomic Analysis of the Effect of Silicon on Wheat Plants Under Control and Pathogen Stress Conditions

F. Chain; C. Côté-Beaulieu; F. Belzile; et al.

5
claims
15
verbatim quotes
146
citations
2
research areas
—
Not open access

Abstract

The supply of soluble silicon (Si) to plants has been associated with many benefits that remain poorly explained and often contested. In this work, the effect of Si was studied on wheat plants under both control and pathogen stress (Blumeria graminis f. sp. tritici) conditions by conducting a large transcriptomic analysis (55,000 unigenes) aimed at comparing the differential response of plants under four treatments. The response to the supply of Si on control (uninfected) plants was limited to 47 genes of diverse functions providing little evidence of regulation of a specific metabolic process. Plants reacted to inoculation with B. graminis f. sp. tritici by an upregulation of many genes linked to stress and metabolic processes and a downregulation of genes linked to photosynthesis. Supplying Si to inoculated plants largely prevented disease development, a phenotypic response that translated into a nearly perfect reversal of genes regulated by the effect of B. graminis f. sp. tritici alone. These results suggest that Si plays a limited role on a plant's transcriptome in the absence of stress, even in the case of a high-Si-accumulating monocot such as wheat. On the other hand, the benefits of Si in the form of biotic stress alleviation were remarkably aligned with a counter-response to transcriptomic changes induced by the pathogen B. graminis f. sp. tritici.

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The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 5

Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Supplying Si to uninfected wheat plants changed only 47 genes, with little regulation of a specific metabolic process.

Treatment
supply of Sie1
Outcome
genese1
Value
47 genese1
Qualifier
limitede1
Comparator
control (uninfected) plantse1

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the effect of Si was studied on wheat plants under both control and pathogen stress (Blumeria graminis f. sp. tritici) conditions”

✓ located verbatim in the source · abstract, characters 148–277 · show in text ↑
e1

“The response to the supply of Si on control (uninfected) plants was limited to 47 genes of diverse functions”

✓ located verbatim in the source · abstract, characters 420–528 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Inoculation with B. graminis f. sp. tritici upregulated many genes linked to stress and metabolic processes in wheat compared with uninfected control plants.

Treatment
inoculation with B. graminis f. sp. triticie2
Interactor
B. graminis f. sp. triticiBlumeria graminis f. sp. triticie2pathogen
Outcome
genes linked to stress and metabolic processese2
Direction
upregulatione2
Comparator
control (uninfected) plantse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗
Blumeria graminis f. sp. tritici
Blumeria graminis f. sp. tritici · Interactor · picture of its genus (no picture of exactly this name)Clemson University - USDA Cooperative Extension Slide Series · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“the effect of Si was studied on wheat plants under both control and pathogen stress (Blumeria graminis f. sp. tritici) conditions”

✓ located verbatim in the source · abstract, characters 148–277 · show in text ↑
e1

“The response to the supply of Si on control (uninfected) plants was limited to 47 genes of diverse functions”

✓ located verbatim in the source · abstract, characters 420–528 · show in text ↑
e2

“Plants reacted to inoculation with B. graminis f. sp. tritici by an upregulation of many genes linked to stress and metabolic processes”

✓ located verbatim in the source · abstract, characters 602–737 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Inoculation with B. graminis f. sp. tritici downregulated genes linked to photosynthesis in wheat compared with uninfected control plants.

Treatment
inoculation with B. graminis f. sp. triticie2
Interactor
B. graminis f. sp. triticiBlumeria graminis f. sp. triticie2pathogen
Outcome
genes linked to photosynthesise3
Direction
downregulatione3
Comparator
control (uninfected) plantse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗
Blumeria graminis f. sp. tritici
Blumeria graminis f. sp. tritici · Interactor · picture of its genus (no picture of exactly this name)Clemson University - USDA Cooperative Extension Slide Series · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“the effect of Si was studied on wheat plants under both control and pathogen stress (Blumeria graminis f. sp. tritici) conditions”

✓ located verbatim in the source · abstract, characters 148–277 · show in text ↑
e1

“The response to the supply of Si on control (uninfected) plants was limited to 47 genes of diverse functions”

✓ located verbatim in the source · abstract, characters 420–528 · show in text ↑
e2

“Plants reacted to inoculation with B. graminis f. sp. tritici by an upregulation of many genes linked to stress and metabolic processes”

✓ located verbatim in the source · abstract, characters 602–737 · show in text ↑
e3

“a downregulation of genes linked to photosynthesis”

✓ located verbatim in the source · abstract, characters 742–792 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Supplying Si to inoculated wheat plants largely prevented disease development compared with inoculated plants.

Treatment
Supplying Si to inoculated plantse5
Interactor
B. graminis f. sp. triticiBlumeria graminis f. sp. triticie2pathogen
Outcome
disease developmente5
Direction
preventede5
Qualifier
largelye5
Comparator
inoculated plantse5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗
Blumeria graminis f. sp. tritici
Blumeria graminis f. sp. tritici · Interactor · picture of its genus (no picture of exactly this name)Clemson University - USDA Cooperative Extension Slide Series · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“the effect of Si was studied on wheat plants under both control and pathogen stress (Blumeria graminis f. sp. tritici) conditions”

✓ located verbatim in the source · abstract, characters 148–277 · show in text ↑
e2

“Plants reacted to inoculation with B. graminis f. sp. tritici by an upregulation of many genes linked to stress and metabolic processes”

✓ located verbatim in the source · abstract, characters 602–737 · show in text ↑
e5

“Supplying Si to inoculated plants largely prevented disease development”

✓ located verbatim in the source · abstract, characters 794–865 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Supplying Si to inoculated wheat plants reversed nearly all genes regulated by the pathogen alone.

Treatment
Supplying Si to inoculated plantse5
Interactor
B. graminis f. sp. triticiBlumeria graminis f. sp. triticie6pathogen
Outcome
genes regulated by the effect of B. graminis f. sp. tritici alonee6
Direction
reversale6
Qualifier
nearly perfecte6
Comparator
inoculated plantse5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗
Blumeria graminis f. sp. tritici
Blumeria graminis f. sp. tritici · Interactor · picture of its genus (no picture of exactly this name)Clemson University - USDA Cooperative Extension Slide Series · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“the effect of Si was studied on wheat plants under both control and pathogen stress (Blumeria graminis f. sp. tritici) conditions”

✓ located verbatim in the source · abstract, characters 148–277 · show in text ↑
e5

“Supplying Si to inoculated plants largely prevented disease development”

✓ located verbatim in the source · abstract, characters 794–865 · show in text ↑
e6

“a nearly perfect reversal of genes regulated by the effect of B. graminis f. sp. tritici alone”

✓ located verbatim in the source · abstract, characters 910–1004 · show in text ↑

silicon atom · molecular: expression · Triticum aestivum (wheat)Positive and negative results

10 papers: 9 positive, 1 negative or no effect

9 in the opposite direction

  1. positive
  2. positive
  3. positive

6 papers more in this group

See all 10 papers →

silicon atom · Blumeria graminis f. sp. tritici · Triticum aestivum (wheat)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

inoculation · Blumeria graminis f. sp. tritici · Triticum aestivum (wheat)Positive and negative results

6 papers: 5 positive, 1 negative or no effect

4 papers in the same direction as this paper · 1 in the opposite direction

  1. negative
  2. positive
  3. positive

2 papers more in this group

See all 6 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.