Paper · 2013 · PLoS ONE

TaAbc1, a Member of Abc1-Like Family Involved in Hypersensitive Response against the Stripe Rust Fungal Pathogen in Wheat

Xiaojing Wang; Xiaojie Wang; Yinghui Duan; et al.

9
claims
18
verbatim quotes
18
citations
2
research areas
✓
Open access · cc-by

Abstract

To search for genes involved in wheat (Triticum aestivum L.) defense response to the infection of stripe rust pathogen Puccinia striiformis f. sp. tritici (Pst), we identified and cloned a new wheat gene similar to the genes in the Abc1-like gene family. The new gene, designated as TaAbc1, encodes a 717-amino acid, 80.35 kD protein. The TaAbc1 protein contains two conserved domains shared by Abc1-like proteins, two trans-membrane domains at the C-terminal, and a 36-amino acid chloroplast targeting presequence at the N-terminal. Characterization of TaAbc1 expression revealed that gene expression was tissue-specific and could be up-regulated by biotic agents (e.g., stripe rust pathogen) and/or by an abiotic stress like wounding. High-fold induction was associated with the hypersensitive response (HR) triggered only by avirulent stripe rust pathotypes, suggesting that TaAbc1 is a rust-pathotype specific HR-mediator. Down-regulating TaAbc1 reduced HR but not the overall resistance level in Suwon11 to CYR23, suggesting TaAbc1 was involved in HR against stripe rust, but overall host resistance is not HR-dependent.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 9

Observationobservedoriginal resultmeasured

Claim · model-written summary

TaAbc1 expression in wheat was tissue-specific.

Gene
TaAbc1e1
Outcome
gene expressione1
Qualifier
tissue-specifice1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“To search for genes involved in wheat (Triticum aestivum L.) defense response to the infection of stripe rust pathogen Puccinia striiformis f. sp. tritici (Pst), we identified and cloned a new wheat gene similar to the genes in the Abc1-like gene family.”

✓ located verbatim in the source · abstract, characters 0–254 · show in text ↑
e1

“Characterization of TaAbc1 expression revealed that gene expression was tissue-specific and could be up-regulated by biotic agents (e.g., stripe rust pathogen) and/or by an abiotic stress like wounding.”

✓ located verbatim in the source · abstract, characters 534–736 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

TaAbc1 expression in wheat could be up-regulated by stripe rust pathogen and by wounding.

Treatment
biotic agents (e.g., stripe rust pathogen)e1
Interactor
stripe rust pathogene1pathogen
Gene
TaAbc1e1
Outcome
gene expressione1
Direction
up-regulatede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“To search for genes involved in wheat (Triticum aestivum L.) defense response to the infection of stripe rust pathogen Puccinia striiformis f. sp. tritici (Pst), we identified and cloned a new wheat gene similar to the genes in the Abc1-like gene family.”

✓ located verbatim in the source · abstract, characters 0–254 · show in text ↑
e1

“Characterization of TaAbc1 expression revealed that gene expression was tissue-specific and could be up-regulated by biotic agents (e.g., stripe rust pathogen) and/or by an abiotic stress like wounding.”

✓ located verbatim in the source · abstract, characters 534–736 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

High-fold induction of TaAbc1 was associated with hypersensitive response triggered by avirulent stripe rust pathotypes.

Interactor
avirulent stripe rust pathotypese2pathogen
Outcome
High-fold inductione2
Direction
increaseinferrede2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“To search for genes involved in wheat (Triticum aestivum L.) defense response to the infection of stripe rust pathogen Puccinia striiformis f. sp. tritici (Pst), we identified and cloned a new wheat gene similar to the genes in the Abc1-like gene family.”

✓ located verbatim in the source · abstract, characters 0–254 · show in text ↑
e2

“High-fold induction was associated with the hypersensitive response (HR) triggered only by avirulent stripe rust pathotypes, suggesting that TaAbc1 is a rust-pathotype specific HR-mediator.”

✓ located verbatim in the source · abstract, characters 737–926 · show in text ↑
Mechanismauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

TaAbc1 is suggested to be a rust-pathotype specific HR-mediator in wheat.

Gene
TaAbc1e2
Outcome
hypersensitive responsee2
Qualifier
rust-pathotype specific HR-mediatore2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“To search for genes involved in wheat (Triticum aestivum L.) defense response to the infection of stripe rust pathogen Puccinia striiformis f. sp. tritici (Pst), we identified and cloned a new wheat gene similar to the genes in the Abc1-like gene family.”

✓ located verbatim in the source · abstract, characters 0–254 · show in text ↑
e2

“High-fold induction was associated with the hypersensitive response (HR) triggered only by avirulent stripe rust pathotypes, suggesting that TaAbc1 is a rust-pathotype specific HR-mediator.”

✓ located verbatim in the source · abstract, characters 737–926 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Down-regulating TaAbc1 reduced HR in Suwon11 against CYR23.

Material
Suwon11e3
Treatment
Down-regulating TaAbc1e3
Interactor
CYR23e3pathogen
Gene
TaAbc1e3
Outcome
HRe3
Direction
reducede3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“To search for genes involved in wheat (Triticum aestivum L.) defense response to the infection of stripe rust pathogen Puccinia striiformis f. sp. tritici (Pst), we identified and cloned a new wheat gene similar to the genes in the Abc1-like gene family.”

✓ located verbatim in the source · abstract, characters 0–254 · show in text ↑
e3

“Down-regulating TaAbc1 reduced HR but not the overall resistance level in Suwon11 to CYR23, suggesting TaAbc1 was involved in HR against stripe rust, but overall host resistance is not HR-dependent.”

✓ located verbatim in the source · abstract, characters 927–1125 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Down-regulating TaAbc1 did not change the overall resistance level of Suwon11 to CYR23.

Material
Suwon11e3
Treatment
Down-regulating TaAbc1e3
Interactor
CYR23e3pathogen
Outcome
overall resistance levele3
Direction
no_changeinferrede3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“To search for genes involved in wheat (Triticum aestivum L.) defense response to the infection of stripe rust pathogen Puccinia striiformis f. sp. tritici (Pst), we identified and cloned a new wheat gene similar to the genes in the Abc1-like gene family.”

✓ located verbatim in the source · abstract, characters 0–254 · show in text ↑
e3

“Down-regulating TaAbc1 reduced HR but not the overall resistance level in Suwon11 to CYR23, suggesting TaAbc1 was involved in HR against stripe rust, but overall host resistance is not HR-dependent.”

✓ located verbatim in the source · abstract, characters 927–1125 · show in text ↑
Mechanismauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

Overall host resistance of wheat is suggested to be not HR-dependent.

Outcome
overall host resistancee3
Qualifier
not HR-dependente3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“To search for genes involved in wheat (Triticum aestivum L.) defense response to the infection of stripe rust pathogen Puccinia striiformis f. sp. tritici (Pst), we identified and cloned a new wheat gene similar to the genes in the Abc1-like gene family.”

✓ located verbatim in the source · abstract, characters 0–254 · show in text ↑
e3

“Down-regulating TaAbc1 reduced HR but not the overall resistance level in Suwon11 to CYR23, suggesting TaAbc1 was involved in HR against stripe rust, but overall host resistance is not HR-dependent.”

✓ located verbatim in the source · abstract, characters 927–1125 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

TaAbc1 encodes a 717-amino acid, 80.35 kD protein.

Gene
TaAbc1e5
Outcome
proteine5
Value
717-amino acid, 80.35 kDe5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“To search for genes involved in wheat (Triticum aestivum L.) defense response to the infection of stripe rust pathogen Puccinia striiformis f. sp. tritici (Pst), we identified and cloned a new wheat gene similar to the genes in the Abc1-like gene family.”

✓ located verbatim in the source · abstract, characters 0–254 · show in text ↑
e5

“The new gene, designated as TaAbc1, encodes a 717-amino acid, 80.35 kD protein.”

✓ located verbatim in the source · abstract, characters 255–334 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The TaAbc1 protein has two conserved domains, two trans-membrane domains and a 36-amino acid chloroplast targeting presequence.

Gene
TaAbc1e4
Outcome
conserved domainse4
Value
36-amino acide4
Qualifier
chloroplast targeting presequencee4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“To search for genes involved in wheat (Triticum aestivum L.) defense response to the infection of stripe rust pathogen Puccinia striiformis f. sp. tritici (Pst), we identified and cloned a new wheat gene similar to the genes in the Abc1-like gene family.”

✓ located verbatim in the source · abstract, characters 0–254 · show in text ↑
e4

“The TaAbc1 protein contains two conserved domains shared by Abc1-like proteins, two trans-membrane domains at the C-terminal, and a 36-amino acid chloroplast targeting presequence at the N-terminal.”

✓ located verbatim in the source · abstract, characters 335–533 · show in text ↑

loss of function · disease · Triticum aestivum (wheat)Positive and negative results

177 papers: 81 positive, 96 negative or no effect

95 papers in the same direction as this paper · 81 in the opposite direction

  1. negative
  2. negative
  3. positive

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.