Paper · 1999 · Physiologia Plantarum

Differential accumulation of ferredoxin‐ and NADH‐dependent glutamate synthase activities, peptides, and transcripts in developing soybean seedlings in response to light, nitrogen, and nodulation

Frank J. Turano; Michael J. Muhitch

10
claims
20
verbatim quotes
21
citations
2
research areas
—
Not open access

Abstract

Soybean ( Glycine max [L.] Merr. cv. Century) seedlings were germinated in vermiculite, sub‐irrigated with a complete nutrient solution, without nitrogen or supplemented with 10 m M KNO 3 , 5 m M (NH 4 ) 2 SO 4 , or 5 m M NH 4 NO 3 . After 14 days in the light, or 5 days in the dark, tissues from different organs were harvested separately. Similarly, tissues from different organs from 14‐ or 21‐day‐old nodulated or non‐nodulated soybean seedlings, maintained in the absence of nitrogen, were harvested. Proteins and total RNA were isolated from the different plant organs and used for immunoblot and RNA blot analyses, respectively. Protein or RNA blots were separately incubated with antisera or hybridized with probes specific for either ferredoxin‐dependent glutamate synthase (Fd‐GOGAT) or NADH‐dependent glutamate synthase (NADH‐GOGAT). The specific activity and the abundance of the Fd‐GOGAT peptide and transcript increased, approximately 3–10 times, in cotyledons and hypocotyls/stems in plants germinated in the light compared with those germinated in the dark. Fd‐GOGAT activity, peptide, and transcript were highest in leaves. Except for increases in the specific activity of samples from roots treated with (NH 4 ) 2 SO 4 or NH 4 NO 3 , there were minor or no changes in Fd‐GOGAT activity, peptide and transcript among organs of seedlings treated with different nitrogen sources or by nodulation. Low levels of NADH‐GOGAT transcript were detected in all organs. NADH‐GOGAT activity, peptide, and transcript increased in roots of seedlings treated with different nitrogen sources, but these changes were more apparent on RNA blots versus immunoblots. The highest NADH‐GOGAT activity and most abundant amounts of the peptide and transcript were observed in nodules. Despite being induced by different environmental factors, both GOGAT activities are controlled, at least in part, by either gene expression or by RNA stability, because in most instances, both isoenzymes exhibited paralleled changes in specific activity and the abundance of their corresponding peptides and transcripts on immunoblot and RNA blots, respectively. However, there were some exceptions to the parallel increases in specific activities, peptides and transcripts which suggest that post‐translational modification may also regulate the activties of the two GOGAT isoforms. Collectively, the results presented here suggest that the two GOGAT isoforms have distinct physiological functions in soybean.

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Claims 10

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Light increased Fd-GOGAT activity, peptide and transcript in cotyledons and stems by about 3–10 times.

Taxon
SoybeanGlycine maxt0
Organ / stage
cotyledons and hypocotyls/stemse0
Treatment
the lighte0
Gene
Fd‐GOGATe0
Outcome
specific activity and the abundance of the Fd‐GOGAT peptide and transcripte0
Direction
increasede0
Value
3–10 timese0
Comparator
the darke0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“The specific activity and the abundance of the Fd‐GOGAT peptide and transcript increased, approximately 3–10 times, in cotyledons and hypocotyls/stems in plants germinated in the light compared with those germinated in the dark.”

✓ located verbatim in the source · abstract, characters 846–1074 · show in text ↑
t0

“developing soybean seedlings”

✓ located verbatim in the source · title, characters 120–148 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Fd-GOGAT activity, peptide and transcript were highest in leaves.

Taxon
SoybeanGlycine maxt0
Organ / stage
leavese0
Gene
Fd‐GOGATe0
Outcome
Fd‐GOGAT activity, peptide, and transcripte0
Direction
higheste0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Fd‐GOGAT activity, peptide, and transcript were highest in leaves.”

✓ located verbatim in the source · abstract, characters 1075–1141 · show in text ↑
t0

“developing soybean seedlings”

✓ located verbatim in the source · title, characters 120–148 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Ammonium sulfate or ammonium nitrate increased root Fd-GOGAT specific activity.

Taxon
SoybeanGlycine maxt0
Treatment
(NH 4 ) 2 SO 4 or NH 4 NO 3e0
Outcome
specific activity of samples from rootse0
Direction
increasese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“increases in the specific activity of samples from roots treated with (NH 4 ) 2 SO 4 or NH 4 NO 3”

✓ located verbatim in the source · abstract, characters 1153–1250 · show in text ↑
t0

“developing soybean seedlings”

✓ located verbatim in the source · title, characters 120–148 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Fd-GOGAT measures otherwise changed little with nitrogen source or nodulation.

Taxon
SoybeanGlycine maxt0
Gene
Fd‐GOGATe0
Outcome
Fd‐GOGAT activity, peptide and transcripte0
Direction
minor or no changese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“there were minor or no changes in Fd‐GOGAT activity, peptide and transcript among organs of seedlings treated with different nitrogen sources or by nodulation.”

✓ located verbatim in the source · abstract, characters 1253–1412 · show in text ↑
t0

“developing soybean seedlings”

✓ located verbatim in the source · title, characters 120–148 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

NADH-GOGAT transcript was low in all organs.

Taxon
SoybeanGlycine maxt0
Gene
NADH‐GOGATe0
Outcome
NADH‐GOGAT transcripte0
Direction
Low levelse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Low levels of NADH‐GOGAT transcript were detected in all organs.”

✓ located verbatim in the source · abstract, characters 1413–1477 · show in text ↑
t0

“developing soybean seedlings”

✓ located verbatim in the source · title, characters 120–148 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Different nitrogen sources increased NADH-GOGAT activity, peptide and transcript in roots.

Taxon
SoybeanGlycine maxt0
Organ / stage
rootse0
Treatment
different nitrogen sourcese0
Outcome
NADH‐GOGAT activity, peptide, and transcripte0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“NADH‐GOGAT activity, peptide, and transcript increased in roots of seedlings treated with different nitrogen sources”

✓ located verbatim in the source · abstract, characters 1478–1594 · show in text ↑
t0

“developing soybean seedlings”

✓ located verbatim in the source · title, characters 120–148 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

NADH-GOGAT changes were more apparent on RNA than protein blots.

Taxon
SoybeanGlycine maxt0
Outcome
these changese0
Direction
more apparente0
Comparator
immunoblotse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“these changes were more apparent on RNA blots versus immunoblots.”

✓ located verbatim in the source · abstract, characters 1600–1665 · show in text ↑
t0

“developing soybean seedlings”

✓ located verbatim in the source · title, characters 120–148 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Nodules had the highest NADH-GOGAT activity, peptide and transcript abundance.

Taxon
SoybeanGlycine maxt0
Organ / stage
nodulese0
Gene
NADH‐GOGATe0
Outcome
NADH‐GOGAT activity and most abundant amounts of the peptide and transcripte0
Direction
higheste0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“The highest NADH‐GOGAT activity and most abundant amounts of the peptide and transcript were observed in nodules.”

✓ located verbatim in the source · abstract, characters 1666–1779 · show in text ↑
t0

“developing soybean seedlings”

✓ located verbatim in the source · title, characters 120–148 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

GOGAT activity generally paralleled peptide and transcript abundance.

Taxon
SoybeanGlycine maxt0
Gene
both isoenzymese0
Outcome
specific activity and the abundance of their corresponding peptides and transcriptse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“both isoenzymes exhibited paralleled changes in specific activity and the abundance of their corresponding peptides and transcripts”

✓ located verbatim in the source · abstract, characters 1968–2099 · show in text ↑
t0

“developing soybean seedlings”

✓ located verbatim in the source · title, characters 120–148 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Exceptions to parallel changes suggest possible post-translational regulation of GOGAT.

Taxon
SoybeanGlycine maxt0
Gene
two GOGAT isoformse0
Outcome
activties of the two GOGAT isoformse0
Qualifier
post‐translational modificatione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“there were some exceptions to the parallel increases in specific activities, peptides and transcripts which suggest that post‐translational modification may also regulate the activties of the two GOGAT isoforms.”

✓ located verbatim in the source · abstract, characters 2152–2363 · show in text ↑
t0

“developing soybean seedlings”

✓ located verbatim in the source · title, characters 120–148 · show in text ↑

nitrogen · molecular: expression · Glycine max (soybean)Positive and negative results

14 papers: 8 positive, 6 negative or no effect

7 papers in the same direction as this paper · 6 in the opposite direction

  1. negative
  2. negative
  3. negative

10 papers more in this group

See all 14 papers →

light · molecular: expression · Glycine max (soybean)Positive and negative results

20 papers: 12 positive, 8 negative or no effect

11 papers in the same direction as this paper · 8 in the opposite direction

  1. no effect
  2. no effect
  3. no effect

16 papers more in this group

See all 20 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.