Paper · 2015 · The Journal of Microbiology

Identification of seven novel virulence genes from Xanthomonas citri subsp. citri by Tn5-based random mutagenesis

Xue Song; Jing Guo; Wen-xiu Ma; et al.

8
claims
21
verbatim quotes
24
citations
2
research areas
—
Not open access

Abstract

To identify novel virulence genes, a mutant library of Xanthomonas citri subsp. citri 29-1 was produced using EZ-Tn5 transposon and the mutants were inoculated into susceptible grapefruit. Forty mutants with altered virulence phenotypes were identified. Nine of the mutants showed a complete loss of citrus canker induction, and the other 31 mutants resulted in attenuated canker symptoms. Southern blot analysis revealed that each of the mutants carried a single copy of Tn5. The flanking sequence was identified by plasmid rescue and 18 different ORFs were identified in the genome sequence. Of these 18 ORFs, seven had not been previously associated with the virulence of X. citri subsp. citri and were therefore confirmed by complementation analysis. Real-time PCR analysis showed that the seven genes were upregulated when the bacteria were grown in citrus plants, suggesting that the expression of these genes was essential for canker development.

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Claims 8

Observationobservedoriginal resultmeasured

Claim · model-written summary

Forty bacterial mutants had altered virulence phenotypes in susceptible grapefruit.

Taxon
grapefruitCitrus ×paradisie0
Interactor
Xanthomonas citri subsp. citri 29-1Xanthomonas citri pv. citrie1pathogen
Outcome
mutants with altered virulence phenotypese0
Value
Forty mutantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus x paradisi
Citrus ×paradisi · TaxonAmada44 · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“mutants were inoculated into susceptible grapefruit. Forty mutants with altered virulence phenotypes were identified”

✓ located verbatim in the source · abstract, characters 136–252 · show in text ↑
e1

“Xanthomonas citri subsp. citri 29-1”

✓ located verbatim in the source · abstract, characters 55–90 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Nine mutants lost citrus canker induction completely.

Taxon
grapefruitCitrus ×paradisie1
Interactor
Xanthomonas citri subsp. citriXanthomonas citri pv. citrit0pathogen
Outcome
citrus canker inductione0
Direction
complete losse0
Value
Ninee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus x paradisi
Citrus ×paradisi · TaxonAmada44 · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Nine of the mutants showed a complete loss of citrus canker induction”

✓ located verbatim in the source · abstract, characters 254–323 · show in text ↑
e1

“susceptible grapefruit”

✓ located verbatim in the source · abstract, characters 165–187 · show in text ↑
t0

“Xanthomonas citri subsp. citri”

✓ located verbatim in the source · title, characters 51–81 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Thirty-one mutants produced attenuated canker symptoms.

Taxon
grapefruitCitrus ×paradisie1
Interactor
Xanthomonas citri subsp. citriXanthomonas citri pv. citrit0pathogen
Outcome
canker symptomse0
Direction
attenuatede0
Value
31 mutantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus x paradisi
Citrus ×paradisi · TaxonAmada44 · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the other 31 mutants resulted in attenuated canker symptoms”

✓ located verbatim in the source · abstract, characters 329–388 · show in text ↑
e1

“susceptible grapefruit”

✓ located verbatim in the source · abstract, characters 165–187 · show in text ↑
t0

“Xanthomonas citri subsp. citri”

✓ located verbatim in the source · title, characters 51–81 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Each altered virulence mutant carried one Tn5 copy.

Taxon
grapefruitCitrus ×paradisie1
Interactor
Xanthomonas citri subsp. citriXanthomonas citri pv. citrit0pathogen
Outcome
single copy of Tn5e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus x paradisi
Citrus ×paradisi · TaxonAmada44 · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“each of the mutants carried a single copy of Tn5”

✓ located verbatim in the source · abstract, characters 427–475 · show in text ↑
e1

“susceptible grapefruit”

✓ located verbatim in the source · abstract, characters 165–187 · show in text ↑
t0

“Xanthomonas citri subsp. citri”

✓ located verbatim in the source · title, characters 51–81 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Plasmid rescue identified 18 different ORFs in the bacterial genome.

Taxon
grapefruitCitrus ×paradisie1
Interactor
Xanthomonas citri subsp. citriXanthomonas citri pv. citrit0pathogen
Outcome
different ORFse0
Value
18 different ORFse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus x paradisi
Citrus ×paradisi · TaxonAmada44 · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“18 different ORFs were identified in the genome sequence”

✓ located verbatim in the source · abstract, characters 536–592 · show in text ↑
e1

“susceptible grapefruit”

✓ located verbatim in the source · abstract, characters 165–187 · show in text ↑
t0

“Xanthomonas citri subsp. citri”

✓ located verbatim in the source · title, characters 51–81 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Complementation confirmed seven ORFs newly associated with bacterial virulence.

Taxon
grapefruitCitrus ×paradisie1
Interactor
X. citri subsp. citriXanthomonas citri pv. citrie0pathogen
Outcome
confirmed by complementation analysise0
Value
sevene0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus x paradisi
Citrus ×paradisi · TaxonAmada44 · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“seven had not been previously associated with the virulence of X. citri subsp. citri and were therefore confirmed by complementation analysis”

✓ located verbatim in the source · abstract, characters 612–753 · show in text ↑
e1

“susceptible grapefruit”

✓ located verbatim in the source · abstract, characters 165–187 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The seven genes were upregulated when bacteria grew in citrus plants.

Taxon
citrus plantsCitruse0
Interactor
Xanthomonas citri subsp. citriXanthomonas citri pv. citrit0pathogen
Outcome
seven genes were upregulatede0
Direction
upregulatede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus
Citrus · Taxon · picture of the genus (one of its species)Ellen Levy Finch ( Elf ) · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the seven genes were upregulated when the bacteria were grown in citrus plants”

✓ located verbatim in the source · abstract, characters 790–868 · show in text ↑
t0

“Xanthomonas citri subsp. citri”

✓ located verbatim in the source · title, characters 51–81 · show in text ↑
Mechanismauthor interpretationoriginal resultnegativemeasured

Claim · model-written summary

The authors suggested that expression of the seven genes was essential for canker development.

Taxon
citrus plantsCitruse1
Interactor
Xanthomonas citri subsp. citriXanthomonas citri pv. citrit0pathogen
Outcome
canker developmente0
Qualifier
expression of these genese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Citrus
Citrus · Taxon · picture of the genus (one of its species)Ellen Levy Finch ( Elf ) · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“expression of these genes was essential for canker development”

✓ located verbatim in the source · abstract, characters 890–952 · show in text ↑
e1

“citrus plants”

✓ located verbatim in the source · abstract, characters 855–868 · show in text ↑
t0

“Xanthomonas citri subsp. citri”

✓ located verbatim in the source · title, characters 51–81 · show in text ↑