Paper · 2004 · Functional Plant Biology

Distinct cis-elements in the Asparagus officinalis asparagine synthetase promoter respond to carbohydrate and senescence signals

Somrutai Winichayakul; Richard L. Moyle; Dacey J. Ryan; et al.

9
claims
25
verbatim quotes
24
citations
3
research areas
—
Not open access

Abstract

The Asparagus officinalis L. asparagine (Asn) synthetase (AS) promoter was analysed for elements responding to carbohydrate and senescence signals. Transgenic Arabidopsis thaliana L. plants containing deletion constructs of the -1958 bp AS promoter linked to the β-glucuronidase (GUS) reporter gene (AS::GUS) were analysed by measuring GUS specific activity. Inclusion of sucrose (Suc), glucose (Glc) or fructose (Fru) in plant media repressed levels of GUS activity in -1958AS::GUS plants, regardless of the light environment, with increases in GUS found 1 d after incubation on Suc-lacking media. Hexokinase is likely to be involved in the signal pathway, as Suc, Glc, Fru, 2-deoxy-d-glucose and mannose were more effective repressors than 3-O-methylglucose, and the hexokinase inhibitor mannoheptulose reduced repression. Plants containing AS::GUS constructs with deletions that reduced the promoter to less than -405 bp did not show low sugar induction. AS::GUS activity was significantly higher in excised leaves induced to senesce by dark storage for 24 h, compared to fresh leaves, for lines containing at least -640 bp of the AS promoter but not those with -523 bp or smaller promoter fragments. Fusion of the -640 to -523 bp region to a -381AS::GUS construct generated a promoter that retained senescence induction but lacked low sugar induction. Alignment of this region to the 33-bp senescence-related sequence of the Arabidopsis and Brassica napus L. SAG12 promoters identified the sequence TTGCACG as being conserved in all the promoters, and which may be an important senescence-responsive element.

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Claims 9

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Sucrose, glucose and fructose repressed GUS activity independently of light.

Taxon
Arabidopsis thaliana L.Arabidopsis thalianae1
Material
-1958AS::GUSe0
Treatment
sucrose (Suc), glucose (Glc) or fructose (Fru)e0
Outcome
GUS activitye0
Direction
repressede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Inclusion of sucrose (Suc), glucose (Glc) or fructose (Fru) in plant media repressed levels of GUS activity in -1958AS::GUS plants, regardless of the light environment”

✓ located verbatim in the source · abstract, characters 359–526 · show in text ↑
e1

“Transgenic Arabidopsis thaliana L. plants containing deletion constructs of the -1958 bp AS promoter linked to the β-glucuronidase (GUS) reporter gene (AS::GUS) were analysed by measuring GUS specific activity.”

✓ located verbatim in the source · abstract, characters 148–358 · show in text ↑
t0

“Asparagus officinalis”

✓ located verbatim in the source · title, characters 29–50 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

GUS activity increased one day after transfer to sucrose-free medium.

Taxon
Arabidopsis thaliana L.Arabidopsis thalianae1
Treatment
Suc-lacking mediae0
Outcome
GUSe0
Direction
increasese0
Qualifier
1 de0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“increases in GUS found 1 d after incubation on Suc-lacking media.”

✓ located verbatim in the source · abstract, characters 533–598 · show in text ↑
e1

“Transgenic Arabidopsis thaliana L. plants containing deletion constructs of the -1958 bp AS promoter linked to the β-glucuronidase (GUS) reporter gene (AS::GUS) were analysed by measuring GUS specific activity.”

✓ located verbatim in the source · abstract, characters 148–358 · show in text ↑
t0

“Asparagus officinalis”

✓ located verbatim in the source · title, characters 29–50 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Sucrose, glucose, fructose, 2-deoxy-d-glucose and mannose repressed more effectively than 3-O-methylglucose.

Taxon
Arabidopsis thaliana L.Arabidopsis thalianae1
Treatment
Suc, Glc, Fru, 2-deoxy-d-glucose and mannosee0
Outcome
repressorse0
Direction
more effectivee0
Comparator
3-O-methylglucosee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Suc, Glc, Fru, 2-deoxy-d-glucose and mannose were more effective repressors than 3-O-methylglucose”

✓ located verbatim in the source · abstract, characters 661–759 · show in text ↑
e1

“Transgenic Arabidopsis thaliana L. plants containing deletion constructs of the -1958 bp AS promoter linked to the β-glucuronidase (GUS) reporter gene (AS::GUS) were analysed by measuring GUS specific activity.”

✓ located verbatim in the source · abstract, characters 148–358 · show in text ↑
t0

“Asparagus officinalis”

✓ located verbatim in the source · title, characters 29–50 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Mannoheptulose reduced sugar repression.

Taxon
Arabidopsis thaliana L.Arabidopsis thalianae1
Treatment
mannoheptulosee0
Outcome
repressione0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the hexokinase inhibitor mannoheptulose reduced repression.”

✓ located verbatim in the source · abstract, characters 765–824 · show in text ↑
e1

“Transgenic Arabidopsis thaliana L. plants containing deletion constructs of the -1958 bp AS promoter linked to the β-glucuronidase (GUS) reporter gene (AS::GUS) were analysed by measuring GUS specific activity.”

✓ located verbatim in the source · abstract, characters 148–358 · show in text ↑
t0

“Asparagus officinalis”

✓ located verbatim in the source · title, characters 29–50 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Promoter deletions below -405 bp abolished low sugar induction.

Taxon
Arabidopsis thaliana L.Arabidopsis thalianae1
Treatment
deletions that reduced the promoter to less than -405 bpe0
Gene
AS::GUSe0
Outcome
low sugar inductione0
Direction
did not showe0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Plants containing AS::GUS constructs with deletions that reduced the promoter to less than -405 bp did not show low sugar induction.”

✓ located verbatim in the source · abstract, characters 825–957 · show in text ↑
e1

“Transgenic Arabidopsis thaliana L. plants containing deletion constructs of the -1958 bp AS promoter linked to the β-glucuronidase (GUS) reporter gene (AS::GUS) were analysed by measuring GUS specific activity.”

✓ located verbatim in the source · abstract, characters 148–358 · show in text ↑
t0

“Asparagus officinalis”

✓ located verbatim in the source · title, characters 29–50 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Dark storage raised GUS activity in senescing excised leaves with at least -640 bp promoter.

Taxon
Arabidopsis thaliana L.Arabidopsis thalianae1
Organ / stage
excised leavese0
Treatment
dark storage for 24 he0
Outcome
AS::GUS activitye0
Direction
highere0
Qualifier
at least -640 bpe0
Comparator
fresh leavese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“AS::GUS activity was significantly higher in excised leaves induced to senesce by dark storage for 24 h, compared to fresh leaves, for lines containing at least -640 bp of the AS promoter but not those with -523 bp or smaller promoter fragments.”

✓ located verbatim in the source · abstract, characters 958–1203 · show in text ↑
e1

“Transgenic Arabidopsis thaliana L. plants containing deletion constructs of the -1958 bp AS promoter linked to the β-glucuronidase (GUS) reporter gene (AS::GUS) were analysed by measuring GUS specific activity.”

✓ located verbatim in the source · abstract, characters 148–358 · show in text ↑
t0

“Asparagus officinalis”

✓ located verbatim in the source · title, characters 29–50 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The -640 to -523 bp promoter fusion retained senescence induction.

Taxon
Arabidopsis thaliana L.Arabidopsis thalianae1
Gene
-381AS::GUSe0
Outcome
retained senescence inductione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Fusion of the -640 to -523 bp region to a -381AS::GUS construct generated a promoter that retained senescence induction but lacked low sugar induction.”

✓ located verbatim in the source · abstract, characters 1204–1355 · show in text ↑
e1

“Transgenic Arabidopsis thaliana L. plants containing deletion constructs of the -1958 bp AS promoter linked to the β-glucuronidase (GUS) reporter gene (AS::GUS) were analysed by measuring GUS specific activity.”

✓ located verbatim in the source · abstract, characters 148–358 · show in text ↑
t0

“Asparagus officinalis”

✓ located verbatim in the source · title, characters 29–50 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The -640 to -523 bp promoter fusion lacked low sugar induction.

Taxon
Arabidopsis thaliana L.Arabidopsis thalianae1
Gene
-381AS::GUSe0
Outcome
lacked low sugar inductione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Fusion of the -640 to -523 bp region to a -381AS::GUS construct generated a promoter that retained senescence induction but lacked low sugar induction.”

✓ located verbatim in the source · abstract, characters 1204–1355 · show in text ↑
e1

“Transgenic Arabidopsis thaliana L. plants containing deletion constructs of the -1958 bp AS promoter linked to the β-glucuronidase (GUS) reporter gene (AS::GUS) were analysed by measuring GUS specific activity.”

✓ located verbatim in the source · abstract, characters 148–358 · show in text ↑
t0

“Asparagus officinalis”

✓ located verbatim in the source · title, characters 29–50 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

TTGCACG was conserved across aligned senescence-related promoters.

Taxon
ArabidopsisArabidopsise0
Gene
TTGCACGe0
Outcome
conserved in all the promoterse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Alignment of this region to the 33-bp senescence-related sequence of the Arabidopsis and Brassica napus L. SAG12 promoters identified the sequence TTGCACG as being conserved in all the promoters, and which may be an important senescence-responsive element.”

✓ located verbatim in the source · abstract, characters 1356–1612 · show in text ↑

fructose · molecular: expression · Arabidopsis thaliana (thale cress)Positive and negative results

2 papers: 1 positive, 1 negative or no effect

1 in the opposite direction

  1. positive
See all 2 papers →

glucose · molecular: expression · Arabidopsis thaliana (thale cress)Positive and negative results

6 papers: 4 positive, 2 negative or no effect

1 paper in the same direction as this paper · 4 in the opposite direction

  1. positive
  2. positive
  3. positive

2 papers more in this group

See all 6 papers →

sucrose · molecular: expression · Arabidopsis thaliana (thale cress)Positive and negative results

14 papers: 9 positive, 5 negative or no effect

4 papers in the same direction as this paper · 9 in the opposite direction

  1. negative
  2. positive
  3. positive

10 papers more in this group

See all 14 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.