Paper · 2012 · PLoS Genetics

Dynamics of Brassinosteroid Response Modulated by Negative Regulator LIC in Rice

Cui Zhang; Yunyuan Xu; Siyi Guo; et al.

13
claims
26
verbatim quotes
172
citations
3
research areas
✓
Open access · cc-by

Abstract

Brassinosteroids (BRs) regulate rice plant architecture, including leaf bending, which affects grain yield. Although BR signaling has been investigated in Arabidopsis thaliana, the components negatively regulating this pathway are less well understood. Here, we demonstrate that Oryza sativa LEAF and TILLER ANGLE INCREASED CONTROLLER (LIC) acts as an antagonistic transcription factor of BRASSINAZOLE-RESISTANT 1 (BZR1) to attenuate the BR signaling pathway. The gain-of-function mutant lic-1 and LIC-overexpressing lines showed erect leaves, similar to BZR1-depleted lines, which indicates the opposite roles of LIC and BZR1 in regulating leaf bending. Quantitative PCR revealed LIC transcription rapidly induced by BR treatment. Image analysis and immunoblotting showed that upon BR treatment LIC proteins translocate from the cytoplasm to the nucleus in a phosphorylation-dependent fashion. Phosphorylation assay in vitro revealed LIC phosphorylated by GSK3-like kinases. For negative feedback, LIC bound to the core element CTCGC in the BZR1 promoter on gel-shift and chromatin immunoprecipitation assay and repressed its transcription on transient transformation assay. LIC directly regulated target genes such as INCREASED LEAF INCLINATION 1 (ILI1) to oppose the action of BZR1. Repression of LIC in ILI1 transcription in protoplasts was partially rescued by BZR1. Phenotypic analysis of the crossed lines depleted in both LIC and BZR1 suggested that BZR1 functionally depends on LIC. Molecular and physiology assays revealed that LIC plays a dominant role at high BR levels, whereas BZR1 is dominant at low levels. Thus, LIC regulates rice leaf bending as an antagonistic transcription factor of BZR1. The phenotypes of lic-1 and LIC-overexpressing lines in erect leaves contribute to ideal plant architecture. Improving this phenotype may be a potential approach to molecular breeding for high yield in rice.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

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Claims 13

Mechanismobservedoriginal resultnegativemeasured

Claim · model-written summary

LIC antagonizes BZR1 and attenuates BR signaling.

Gene
LICe0
Outcome
BR signaling pathwaye0
Direction
attenuatee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Oryza sativa LEAF and TILLER ANGLE INCREASED CONTROLLER (LIC) acts as an antagonistic transcription factor of BRASSINAZOLE-RESISTANT 1 (BZR1) to attenuate the BR signaling pathway.”

✓ located verbatim in the source · abstract, characters 279–459 · show in text ↑
t0

“LIC in Rice”

✓ located verbatim in the source · title, characters 69–80 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

lic-1 and LIC overexpressing lines had erect leaves like BZR1 depleted lines.

Material
lic-1 and LIC-overexpressing linese0
Gene
LICe0
Outcome
erect leavese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The gain-of-function mutant lic-1 and LIC-overexpressing lines showed erect leaves, similar to BZR1-depleted lines”

✓ located verbatim in the source · abstract, characters 460–574 · show in text ↑
t0

“LIC in Rice”

✓ located verbatim in the source · title, characters 69–80 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

BR treatment rapidly induced LIC transcription.

Treatment
BR treatmente0
Gene
LICe0
Outcome
LIC transcriptione0
Direction
inducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Quantitative PCR revealed LIC transcription rapidly induced by BR treatment.”

✓ located verbatim in the source · abstract, characters 655–731 · show in text ↑
t0

“LIC in Rice”

✓ located verbatim in the source · title, characters 69–80 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

BR treatment drove phosphorylation dependent LIC translocation to the nucleus.

Treatment
BR treatmente0
Gene
LIC proteinse0
Outcome
translocate from the cytoplasm to the nucleuse0
Qualifier
phosphorylation-dependent fashione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“upon BR treatment LIC proteins translocate from the cytoplasm to the nucleus in a phosphorylation-dependent fashion.”

✓ located verbatim in the source · abstract, characters 778–894 · show in text ↑
t0

“LIC in Rice”

✓ located verbatim in the source · title, characters 69–80 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

GSK3 like kinases phosphorylated LIC in vitro.

Gene
LICe0
Outcome
LIC phosphorylated by GSK3-like kinasese0
Setting
in vitroe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Phosphorylation assay in vitro revealed LIC phosphorylated by GSK3-like kinases.”

✓ located verbatim in the source · abstract, characters 895–975 · show in text ↑
t0

“LIC in Rice”

✓ located verbatim in the source · title, characters 69–80 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

LIC bound the CTCGC core element in the BZR1 promoter.

Gene
LICe0
Outcome
bound to the core element CTCGC in the BZR1 promotere0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“LIC bound to the core element CTCGC in the BZR1 promoter on gel-shift and chromatin immunoprecipitation assay”

✓ located verbatim in the source · abstract, characters 999–1108 · show in text ↑
t0

“LIC in Rice”

✓ located verbatim in the source · title, characters 69–80 · show in text ↑
Mechanismobservedoriginal resultnegativemeasured

Claim · model-written summary

LIC repressed BZR1 transcription.

Gene
LICe0
Outcome
repressed its transcriptione0
Direction
repressede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“LIC bound to the core element CTCGC in the BZR1 promoter on gel-shift and chromatin immunoprecipitation assay and repressed its transcription on transient transformation assay.”

✓ located verbatim in the source · abstract, characters 999–1175 · show in text ↑
t0

“LIC in Rice”

✓ located verbatim in the source · title, characters 69–80 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

LIC directly regulated ILI1 opposite to BZR1.

Gene
LICe0
Outcome
INCREASED LEAF INCLINATION 1 (ILI1)e0
Direction
opposee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“LIC directly regulated target genes such as INCREASED LEAF INCLINATION 1 (ILI1) to oppose the action of BZR1.”

✓ located verbatim in the source · abstract, characters 1176–1285 · show in text ↑
t0

“LIC in Rice”

✓ located verbatim in the source · title, characters 69–80 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

BZR1 partially rescued LIC repression of ILI1 transcription in protoplasts.

Treatment
BZR1e0
Outcome
Repression of LIC in ILI1 transcriptione0
Direction
rescuede0
Setting
protoplastse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Repression of LIC in ILI1 transcription in protoplasts was partially rescued by BZR1.”

✓ located verbatim in the source · abstract, characters 1286–1371 · show in text ↑
t0

“LIC in Rice”

✓ located verbatim in the source · title, characters 69–80 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

BZR1 functionally depends on LIC according to crossed line phenotypes.

Material
crossed lines depleted in both LIC and BZR1e0
Gene
BZR1e0
Outcome
BZR1 functionally depends on LICe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Phenotypic analysis of the crossed lines depleted in both LIC and BZR1 suggested that BZR1 functionally depends on LIC.”

✓ located verbatim in the source · abstract, characters 1372–1491 · show in text ↑
t0

“LIC in Rice”

✓ located verbatim in the source · title, characters 69–80 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

LIC dominates at high BR levels.

Gene
LICe0
Outcome
dominant rolee0
Qualifier
high BR levelse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“LIC plays a dominant role at high BR levels, whereas BZR1 is dominant at low levels.”

✓ located verbatim in the source · abstract, characters 1538–1622 · show in text ↑
t0

“LIC in Rice”

✓ located verbatim in the source · title, characters 69–80 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

BZR1 dominates at low BR levels.

Gene
BZR1e0
Outcome
dominante0
Qualifier
low levelse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“LIC plays a dominant role at high BR levels, whereas BZR1 is dominant at low levels.”

✓ located verbatim in the source · abstract, characters 1538–1622 · show in text ↑
t0

“LIC in Rice”

✓ located verbatim in the source · title, characters 69–80 · show in text ↑
Recommendationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Improving erect leaf architecture may support high yield molecular breeding.

Outcome
molecular breeding for high yielde0
Qualifier
Improving this phenotypee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Improving this phenotype may be a potential approach to molecular breeding for high yield in rice.”

✓ located verbatim in the source · abstract, characters 1819–1917 · show in text ↑
t0

“LIC in Rice”

✓ located verbatim in the source · title, characters 69–80 · show in text ↑

brassinolide · yield · Oryza sativa (rice)Positive and negative results

13 papers: 12 positive, 1 negative or no effect

11 papers in the same direction as this paper · 1 in the opposite direction

  1. negative
  2. positive
  3. positive

9 papers more in this group

See all 13 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.