Paper · 2013 · Journal of Integrative Plant Biology

Validation and Characterization of Ghd7.1, a Major Quantitative Trait Locus with Pleiotropic Effects on Spikelets per Panicle, Plant Height, and Heading Date in Rice (Oryza sativa L.)

Touming Liu; Haiyang Liu; Huang Zhang; et al.

9
claims
20
verbatim quotes
78
citations
2
research areas
—
Not open access

Abstract

A quantitative trait locus (QTL) that affects heading date (HD) and the number of spikelets per panicle (SPP) was previously identified in a small region on chromosome 7 in rice (Oryza sativa L.). In order to further characterize the QTL region, near isogenic lines (NILs) were quickly obtained by self-crossing recombinant inbred line 189, which is heterozygous in the vicinity of the target region. The pleiotropic effects of QTL Ghd7.1 on plant height (PH), SPP, and HD, were validated using an NIL-F2 population. Ghd7.1 explained 50.2%, 45.3%, and 76.9% of phenotypic variation in PH, SPP, and HD, respectively. Ghd7.1 was precisely mapped to a 357-kb region on the basis of analysis of the progeny of the NIL-F2 population. Day-length treatment confirmed that Ghd7.1 is sensitive to photoperiod, with long days delaying heading up to 12.5 d. Identification of panicle initiation and development for the pair of NILs showed that Ghd7.1 elongated the photoperiod-sensitive phase more than 10 d, but did not change the basic vegetative phase and the reproductive growth phase. These findings indicated that Ghd7.1 regulates SPP by controlling the rate of panicle differentiation rather than the duration of panicle development.

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Claims 9

Associationobservedoriginal resultmeasured

Claim · model-written summary

Ghd7.1 explained 50.2% of variation in PH.

Gene
Ghd7.1e0
Outcome
PHe0
Value
50.2%e0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Ghd7.1 explained 50.2%, 45.3%, and 76.9% of phenotypic variation in PH, SPP, and HD, respectively”

✓ located verbatim in the source · abstract, characters 517–614 · show in text ↑
e1

“rice (Oryza sativa L.)”

✓ located verbatim in the source · abstract, characters 173–195 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Ghd7.1 explained 45.3% of variation in SPP.

Gene
Ghd7.1e0
Outcome
SPPe0
Value
45.3%e0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Ghd7.1 explained 50.2%, 45.3%, and 76.9% of phenotypic variation in PH, SPP, and HD, respectively”

✓ located verbatim in the source · abstract, characters 517–614 · show in text ↑
e1

“rice (Oryza sativa L.)”

✓ located verbatim in the source · abstract, characters 173–195 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Ghd7.1 explained 76.9% of variation in HD.

Gene
Ghd7.1e0
Outcome
HDe0
Value
76.9%e0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Ghd7.1 explained 50.2%, 45.3%, and 76.9% of phenotypic variation in PH, SPP, and HD, respectively”

✓ located verbatim in the source · abstract, characters 517–614 · show in text ↑
e1

“rice (Oryza sativa L.)”

✓ located verbatim in the source · abstract, characters 173–195 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Ghd7.1 mapped to a 357-kb region.

Gene
Ghd7.1e0
Outcome
mappede0
Value
357-kbe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Ghd7.1 was precisely mapped to a 357-kb region”

✓ located verbatim in the source · abstract, characters 616–662 · show in text ↑
e1

“rice (Oryza sativa L.)”

✓ located verbatim in the source · abstract, characters 173–195 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Long days delayed Ghd7.1 associated heading by up to 12.5 d.

Treatment
long dayse0
Gene
Ghd7.1e0
Outcome
headinge0
Direction
delayinge0
Value
12.5 de0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Day-length treatment confirmed that Ghd7.1 is sensitive to photoperiod, with long days delaying heading up to 12.5 d”

✓ located verbatim in the source · abstract, characters 729–845 · show in text ↑
e1

“rice (Oryza sativa L.)”

✓ located verbatim in the source · abstract, characters 173–195 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Ghd7.1 extended the photoperiod sensitive phase by more than 10 d.

Gene
Ghd7.1e0
Outcome
photoperiod-sensitive phasee0
Direction
elongatede0
Value
10 de0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Ghd7.1 elongated the photoperiod-sensitive phase more than 10 d”

✓ located verbatim in the source · abstract, characters 933–996 · show in text ↑
e1

“rice (Oryza sativa L.)”

✓ located verbatim in the source · abstract, characters 173–195 · show in text ↑
Associationobservedoriginal resultno effectmeasured

Claim · model-written summary

Ghd7.1 did not change the basic vegetative phase.

Gene
Ghd7.1e2
Outcome
basic vegetative phasee0
Direction
did not changee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“but did not change the basic vegetative phase and the reproductive growth phase”

✓ located verbatim in the source · abstract, characters 998–1077 · show in text ↑
e1

“rice (Oryza sativa L.)”

✓ located verbatim in the source · abstract, characters 173–195 · show in text ↑
e2

“Ghd7.1 elongated the photoperiod-sensitive phase more than 10 d”

✓ located verbatim in the source · abstract, characters 933–996 · show in text ↑
Associationobservedoriginal resultno effectmeasured

Claim · model-written summary

Ghd7.1 did not change the reproductive growth phase.

Gene
Ghd7.1e2
Outcome
reproductive growth phasee0
Direction
did not changee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“but did not change the basic vegetative phase and the reproductive growth phase”

✓ located verbatim in the source · abstract, characters 998–1077 · show in text ↑
e1

“rice (Oryza sativa L.)”

✓ located verbatim in the source · abstract, characters 173–195 · show in text ↑
e2

“Ghd7.1 elongated the photoperiod-sensitive phase more than 10 d”

✓ located verbatim in the source · abstract, characters 933–996 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Ghd7.1 was inferred to regulate spikelets through panicle differentiation rate.

Gene
Ghd7.1e0
Outcome
SPPe0
Qualifier
controlling the rate of panicle differentiatione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Ghd7.1 regulates SPP by controlling the rate of panicle differentiation rather than the duration of panicle development”

✓ located verbatim in the source · abstract, characters 1109–1228 · show in text ↑
e1

“rice (Oryza sativa L.)”

✓ located verbatim in the source · abstract, characters 173–195 · show in text ↑

light · phenology · Oryza sativa (rice)Positive and negative results

24 papers: 14 positive, 10 negative or no effect

9 papers in the same direction as this paper · 14 in the opposite direction

  1. positive
  2. positive
  3. positive

20 papers more in this group

See all 24 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.